Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02238 ATGGCATCTTTGGAGGAGAAAGCTGCAGCTGGAACTTGCACTCCTGCTTCTGATGTTGGAAAAGAATTTATCTTTCAGTACTACAATGTCTTGTATCGGTGTCCCGAGCTAGGACATCAGTTTTACCAGGATATTAGTAAGCTTCGTCGCCCAGAAGAAAATGGTCATATGAGCATTACAACCACTATGCAGGCAATTAAAGAGAAAATACTCTCAATGGGCTACTCTGGACCAGATTGCAAGACTGAGGTTATATCTGTTGATTCCCAAGATTCCTACAATGGAGGAATTATTGTGGCTGTTACTGGGTATATGACCTTAAAGGACAAGTTAAGACGGATGTTCGTCCAGATTTTCTTTCTTGCTCCACAAGACAAAGGCTACTTTGTTTTGACTGATGTTCTTAGATATGTTGACGACGACAGACCACAACAAGTGACTGATGTCTTCCAAGCTTCCTCAAATTTTGAAAGTGATGATTATTCAGAAGATGAAGCTTTTAAGCAGTCAATTGATGTAAACGGAGAGGTGTATAATCCTCCCGAGAGTGAACGAACAGTTATAGTGGTTGACACTTTAGGGACAGAAGTTGTTGAAGTTGCGGACAAGTCCCAAACTATGTTTGAATCCTCTTTGACATCCTCATCTAGCTTTCAAATTGCTGAAGTTATAGGGACGGAGGTAGTTGGCGTTCGTGAAAAGTTCCAAACTATGTCTGAATCCTATTTGACATTCTCATCTAGCTGTCAAGTTGCTGAAGTTCCAGGGATGGAGGTGGAGGTTGTTGACGTTCCTGACAAGTCTCAAACTATGTCTGAACCCTCTTTGACATCCTCATCTAGCTTTCAAATTACTGAAGTTCCAGGGACGGAGGTATTTGACGTTCCTGGCAAGTCCCAAACTATGTCTGAATCCTCTTTGACATCCTCATCAAGCTGTCAAATTGCTGAAGTTCCAGGGACGGAGGTGGAAGTTGTTGACGTTCCTGACAAGTCCCAAACTATGTCTGAATCCTCTTTGACATCCTCAGGGACGGAGGTTGTTGACGTTCCTGACAATTCCCAAGCTATGTCTGAATCCTCTTTGACTTCCTCATCTAGCCTTGAAATGGTTGAAGTTCCAGGGATGGAGATTGTTGAAGTTCCTGACAAGTCCCAAATTTCGTTGGAATCCTCTTCTAGCTCAGAAGAAGTGCCTAAGAAGTCATATGCCTCCGTATTGAAATCTAATGCGACACGGTCATATGCTCCTGCATCTTCTGCTGTAAGACCTGCACCAAGGACCCAAAATCATCTGGTGGTTACTGCATCTCCACCAGTTGATGTATCCAAGACTTTGGCTCCTGATTCTAAGGTTACTGGAAATGGGAATCAGCTAAAAACTGGAGATAATCGATATTCTATCTATCTAAAAGGGTTGCCCATGTCTGCCACAAATAACCTTATTGAGAATGAGTTCAAGAAGTTTGGATCTATCAAGAGAAATAGTATCCAAATTAAAACCAATAAGGATTTCTGTTTTGGCTTCGTTGAATTTGAAGTGTCAAGTGCTATGCAAAGAGCAATAGAGGCTTCACCAGTTCTCATCAATGGACACCGGGTTGTCGTTGAGGAAAAGAGATCCATGAACCGAAGCAATCCTAGAGGGCGAGGATACAGGACTGAACGAGGCAGAGGTTATGGTGATGTTACCAATGAAAAGAATTATGGTGATGGTTATGTGAGTGGCAGGTCTGAGAACGGACACAGCAATAGGGGATGGCGCTTCAGCTCGGGGAATTAA 1782 0.4282 MASLEEKAAAGTCTPASDVGKEFIFQYYNVLYRCPELGHQFYQDISKLRRPEENGHMSITTTMQAIKEKILSMGYSGPDCKTEVISVDSQDSYNGGIIVAVTGYMTLKDKLRRMFVQIFFLAPQDKGYFVLTDVLRYVDDDRPQQVTDVFQASSNFESDDYSEDEAFKQSIDVNGEVYNPPESERTVIVVDTLGTEVVEVADKSQTMFESSLTSSSSFQIAEVIGTEVVGVREKFQTMSESYLTFSSSCQVAEVPGMEVEVVDVPDKSQTMSEPSLTSSSSFQITEVPGTEVFDVPGKSQTMSESSLTSSSSCQIAEVPGTEVEVVDVPDKSQTMSESSLTSSGTEVVDVPDNSQAMSESSLTSSSSLEMVEVPGMEIVEVPDKSQISLESSSSSEEVPKKSYASVLKSNATRSYAPASSAVRPAPRTQNHLVVTASPPVDVSKTLAPDSKVTGNGNQLKTGDNRYSIYLKGLPMSATNNLIENEFKKFGSIKRNSIQIKTNKDFCFGFVEFEVSSAMQRAIEASPVLINGHRVVVEEKRSMNRSNPRGRGYRTERGRGYGDVTNEKNYGDGYVSGRSENGHSNRGWRFSSGN* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02238 593 Gene3D - 9 168 - -
Pte3g02238 593 CDD RRM_SF 468 537 - -
Pte3g02238 593 MobiDBLite consensus disorder prediction 331 367 - -
Pte3g02238 593 SUPERFAMILY RNA-binding domain, RBD 462 562 IPR035979 GO:0003676
Pte3g02238 593 MobiDBLite consensus disorder prediction 540 593 - -
Pte3g02238 593 CDD NTF2 18 139 IPR018222 -
Pte3g02238 593 MobiDBLite consensus disorder prediction 540 562 - -
Pte3g02238 593 Gene3D - 449 583 IPR012677 -
Pte3g02238 593 FunFam Nuclear transport factor 2 family protein 10 143 - -
Pte3g02238 593 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 466 559 IPR000504 GO:0003723
Pte3g02238 593 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 16 576 IPR039539 -
Pte3g02238 593 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 468 524 IPR000504 GO:0003723
Pte3g02238 593 SUPERFAMILY NTF2-like 16 138 IPR032710 -
Pte3g02238 593 Pfam Nuclear transport factor 2 (NTF2) domain 19 137 IPR002075 -
Pte3g02238 593 SMART rrm1_1 467 537 IPR000504 GO:0003723
Pte3g02238 593 MobiDBLite consensus disorder prediction 577 593 - -
Pte3g02238 593 ProSiteProfiles Nuclear transport factor 2 domain profile. 19 137 IPR018222 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02238 Pte-Chr3 40445007 40448408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02238 447 523 Eukaryotic Initiation Factors Gene Family AT2G36660 34.615 6.54e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02238 K24983 - cave:132163204 195.667