Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02224 ATGCATAAAATCAAAGGACTATATAACAAAACAGAGTATTCACATTTTCATTCTCATTCTCTCTGTTTCACCATTCTCGGAAACACAATTTCATTCACTCTCTCAATACCTCCAAACCTTACGCTTCTGCTTTACCTGATTGTATGTATGGCCAAAACAGGAGTGGTGGATTCTGATCCTTCTTCGGTGTTGACAAAGACAACGGAGTTGAAGAAAGAATTACAGAGGTTAGTGAGAGCCATTGTTGATGATGAAGAATGTTCTAGCATTGAAACCATTGACCAAGCTAAAGAAACCCTTTGGGCTTTAAAGGAGTTGAAGCTTAAGAAGAGATCAGTGTCTTTCAAGATTCGTGAAGCACTGTCTTGCCCTCAAGAATTTAGGTGTCCACTCTCAAAGGAACTCATGAGAGATCCTGTCATTGTGGCTTCTGGGCAGACATATGATAGACCCTTCATTGAGAAATGGCTGAAAGCAGGAAACAGAACTTGCCCCAAGACTCAACAAGTACTTTCGCACACTAATCTTACTCCAAATTACTTGGTCCAAGAATGGATAGCACAATGGTGTAAAAATAGAGGAATTCAATTGTCTGATCCTGTTCACTACATCAATGAAGAAGGCATAACAGAAAGTGATCGCTGTTATTTCATTTCTCTACTTGAAAAAATGTCAGCCACGCTTTCTGATCAAAAGGCAGCGGCAAGGGAGCTTCGGTTGTTGACAAAGAGGATGCCCTTCATTAGAGCACTTTTCAGTGAGTCTGAAGATGCAATACCCCAATTGCTAAGTCCATTATCCGGACACAACTCTCTAAATGGCATGGATCCTGATCTTCAAGAAGATGTCATCACAACATTGTTGAATATTTCGATCCATGACAACAATAAGAAGTTAGTAGCAGAAACCCCTGTGGTAATTCCATTGCTCATGGAAGCATTAAGATCAGGAACCCTTCAAACAAGAGCCAACGCAGCTGCAACCATTTTCACTTTATCTGCTCTAGAATCTAACAAGGCGCTCATAGGGAAATCTGGTGCCTTAAAGCCTTTAATCGATCTCTTGGAAGAAGGGCATCCATTGGCTATGAAAGATGTTGCTTCAGCAATTTTCAGTTTATGTGTCATCCATGAGAACAAAGGAAGAGCAGTAAACAATGGTGCAGTCAGTGTAATACTTGAGAAAATCACAAAACGCAAGCATGTCGACGAGTTACTCGCAATCCTGGCAATGCTGGCAAGTCATCAGAGAGCTGTAGATGAGATAGGAGAGCTTGGAGCAGTAGCAACATTATTGAGTATCATTAGAGAAAGCACTTGTGACAGAAACAAGGAGAATTGTATTGCGATTATTCACACAGTATGTCTCAACAACAGAAGCAAGTTAAGAGAGATAAAAGAAGAGGAAAAGAAGTATAAAACAATCTCTGAGCTTGCTTGCAATGGAACCTCAAGAGCTAAGAGAAAAGCCAGTGGTATTCTTGAGAGACTGCAAAGGGCCATCCATATAACTCATACGGCATGA 1524 0.4068 MHKIKGLYNKTEYSHFHSHSLCFTILGNTISFTLSIPPNLTLLLYLIVCMAKTGVVDSDPSSVLTKTTELKKELQRLVRAIVDDEECSSIETIDQAKETLWALKELKLKKRSVSFKIREALSCPQEFRCPLSKELMRDPVIVASGQTYDRPFIEKWLKAGNRTCPKTQQVLSHTNLTPNYLVQEWIAQWCKNRGIQLSDPVHYINEEGITESDRCYFISLLEKMSATLSDQKAAARELRLLTKRMPFIRALFSESEDAIPQLLSPLSGHNSLNGMDPDLQEDVITTLLNISIHDNNKKLVAETPVVIPLLMEALRSGTLQTRANAAATIFTLSALESNKALIGKSGALKPLIDLLEEGHPLAMKDVASAIFSLCVIHENKGRAVNNGAVSVILEKITKRKHVDELLAILAMLASHQRAVDEIGELGAVATLLSIIRESTCDRNKENCIAIIHTVCLNNRSKLREIKEEEKKYKTISELACNGTSRAKRKASGILERLQRAIHITHTA* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02224 507 Pfam U-box domain 124 193 IPR003613 GO:0004842|GO:0016567
Pte3g02224 507 ProSiteProfiles U-box domain profile. 122 196 IPR003613 GO:0004842|GO:0016567
Pte3g02224 507 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 196 IPR013083 -
Pte3g02224 507 SMART Ubox_2 126 189 IPR003613 GO:0004842|GO:0016567
Pte3g02224 507 SUPERFAMILY RING/U-box 122 199 - -
Pte3g02224 507 FunFam RING-type E3 ubiquitin transferase 207 503 - -
Pte3g02224 507 FunFam RING-type E3 ubiquitin transferase 122 196 - -
Pte3g02224 507 SUPERFAMILY ARM repeat 227 497 IPR016024 -
Pte3g02224 507 CDD RING-Ubox_PUB 124 176 IPR045210 -
Pte3g02224 507 Gene3D - 215 502 IPR011989 -
Pte3g02224 507 PANTHER U BOX DOMAIN-CONTAINING 69 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02224 Pte-Chr3 40118550 40121588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02224 186 508 U-box Gene Family AT3G07360 61.212 1.25e-130 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02224 - - mnt:21398908 672.159