Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02223 ATGTCTTCCGTTGCAAAACAAGCAGAACTATTACGAAAAGATGGCAACATTTCCTTCAAGAAAGACCGATTCGGAGCAGCCATAGATGCATATACAGAGGCTATTGCTTTATGTCCCAATGTTCCTGTGTATTGGACTAATCGTGCATTGTGCCACCTCAAGCGGAATAATTGGACAAGAGTGGAAGAAGACTGTGTAAAAGCCATTCAACTGGACACCAAATCAGTCAAGGCTCACTACATGTTAGGACTTGCATTGCTTCAGAGAAGGGAATGTTCTAAGGGAGTAAAGGAACTACAAAAGGCCTTGGATCTCGGGAGGGGTGCTGATTCCAAAGGCTATATGGTTGAAGAGATCTGGGAGGAGCTAGCAAAAGCCAAATACATGGAGTGGGAAAAAGAATCCTCTAAGCGATCATGGGAAATGCAAAACTTGAAAGAAGCCTGCGAGAACGCCCTCCGTGAGAAACATTTTCTTGATAATACTAATTTGGAAGCAGTTTCAGATGATGATGGTTGTTACTCACATCAAATGGAGTCTTTAAGAAGAATATTTAACAAAGCTGCAGAGACTGACATTCCAACTGAGGTGCCAGATTACTTGTGCTGCAGGATAACGCTTGAAATTTTCCGTGATCCTGTTATCACCCCATGTGGGATAACATATGAAAGGGCTGTCATCCTTGACCATCTTGAGAAGGTCGGCGAGTTCGATCCAGTTACACGTGAACCCCTCAAACCATCACAGCTGGTGCCGAACTTTGCCATAAAGGAAGCAGTGCAGGCATTCTTGGATACACATGTATGGGCCTACAAGAATTGCTAA 825 0.4376 MSSVAKQAELLRKDGNISFKKDRFGAAIDAYTEAIALCPNVPVYWTNRALCHLKRNNWTRVEEDCVKAIQLDTKSVKAHYMLGLALLQRRECSKGVKELQKALDLGRGADSKGYMVEEIWEELAKAKYMEWEKESSKRSWEMQNLKEACENALREKHFLDNTNLEAVSDDDGCYSHQMESLRRIFNKAAETDIPTEVPDYLCCRITLEIFRDPVITPCGITYERAVILDHLEKVGEFDPVTREPLKPSQLVPNFAIKEAVQAFLDTHVWAYKNC* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02223 274 SMART Ubox_2 200 263 IPR003613 GO:0004842|GO:0016567
Pte3g02223 274 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 3 272 IPR045200 GO:0000209|GO:0061630
Pte3g02223 274 SUPERFAMILY TPR-like 6 128 IPR011990 GO:0005515
Pte3g02223 274 ProSiteProfiles U-box domain profile. 196 270 IPR003613 GO:0004842|GO:0016567
Pte3g02223 274 SUPERFAMILY RING/U-box 191 271 - -
Pte3g02223 274 ProSiteProfiles TPR repeat profile. 8 41 IPR019734 GO:0005515
Pte3g02223 274 Pfam U-box domain 197 269 IPR003613 GO:0004842|GO:0016567
Pte3g02223 274 Coils Coil 142 162 - -
Pte3g02223 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 273 IPR013083 -
Pte3g02223 274 SMART tpr_5 76 109 IPR019734 GO:0005515
Pte3g02223 274 SMART tpr_5 8 41 IPR019734 GO:0005515
Pte3g02223 274 SMART tpr_5 42 75 IPR019734 GO:0005515
Pte3g02223 274 CDD RING-Ubox_CHIP 197 267 IPR045202 -
Pte3g02223 274 Gene3D Tetratricopeptide repeat domain 2 138 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02223 Pte-Chr3 40113973 40117670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02223 8 272 U-box Gene Family AT3G07370 68.421 4.59e-136 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02223 K09561 - bvg:104884045 425.246