Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02132 ATGCTTCTGAGTAAATATCCTCATTTGCTTCTCAATTCCAACCCCAACTGCCTTCATTCAATTAACGAAAGCTATGGTAGGGTCTTCTTCTTCAGTAATACGAATAGCATACTATGTTCTGAATCTCAAAATTTACAAAAAAGTTGTGGGCATGCTCTCCTTGTTAAAGCTGGGAATAGTCCTCAGCCTAAGGACATCCTTGGTTTTTGGAAGCTCACCGGCACAAATGGGATGTCTGATACATACAAAAGCAGAGCAACAAACAGCGCCATTGAAGGTCTTACTGGAAATGACATATCAGTAATTGTGAATACTAATTCAGTTCCAACATCTGAGGGAGACAGTTCTGGAAGCTTAGGAAGACTGAAAGCTGAAAAAGTTAAAGCGCTTGTTCGAAAGCGATATTCTCGATTGAAGCGGCAAAATAGGGAAGAAAATGGCGAGCTAGACATGGAACAGGAACAACTAGAGGTGCATCTTAATCCAACCAAACAAAAATCTATTGGTGAAAAGGGAACTGAAAGAAGTTTCACATGGGCAAAAAAATCTGCAAAAGCTTATCAATCAAATCGAAATGCAGTCTTTACGCAAAACAAGGTTCACTCTGAAGACATTGGTTTCCAGAAGTTCCAAAACACACCGAAGAAATCTGAAACCACCAGTGATGTCAACTCTCGTGTGTTAGATGCACATGATTCTGACTCTCATTTAAGGGGTTGGGGTAATGGGAGATCTGTGGACATGTTCAGGTCTAGAACACCTGAGATTTCAAAGGGAAGGGGAAAGGGGTTTGCTAACAGTGACTTCTTCAGTCGAAAGTCCTTCAAAGATATCGGCTGCAGCGAATACATGATTGAATCTCTGAAGAAGCAACATTTCCCACGCCCTTCTCATATTCAGGCAATGGCATTCAAACCCGTCTTTAATGGAAAGAGTTGTATCATTGCTGATCAAAGTGGTTCCGGAAAGACGTTAGCATATTTGCTACCAGTGATTCAGCTTCTTAGACAAGAGGAGCTTGACAGAAAAATTGAACCAGCATCACAAGCTCCCAGAGTGGTTATACTGGCACCAACTGCTGAGTTAGCTTCTCAAGTTTTAAATAACTGTCGAGCAATGTCAAGATCTGGGGTTCCATTCAAATCTATTGTTGTTACTGGTGGTTTTCGACAGAGAACTCAACTAGAAAGTTTGGAGCAAGGTGTTGATGTGCTAATAGCAACACCTGGACGTTTTTTATACCTTATTAAGGAAGGATTTCTGCAGTTAACCAATCTAAGATGTGCTGTATTAGATGAAGTAGACATACTCTTCAGCAATGAGGATTCTGAGGCAGCACTTAAGTGCTTGATCAGTTCGTCACCAGTTACTACACAGTACCTATTTGTCACCGCAACTTTACCTGGAGATATATATAACAAAATAATTGAAAATTTTCCTGATTGTCAAGTGATCATGGGACCTGGTATGCATCGAATAAGCACTGGACTTGAAGAGGTTCTAGTAGATTGCAGTGGAGATGATGGAACTGAAAAAAATCCTGATACCGCTTTCTTGAATAAGAAATCAGCCCTTTTGCAGCTGTTGGAGGCAAACCGTGTAGAGAAAACAATTGTATTTTGTAACAGGATCGAAACATGTAGAAAAGTTGAGAATATATTAAAGCGCACTGATCGAAAAGGAACGCTTGTACAAGTTCTACCATTCCATGCTGCTGTGACACAGGAACAAAGAATCAGTAATATGGAGAAATTTAAGCATTCTCAATCTGACGGTATCTCCCAGTTTTTAGTTTGTACAGATAGAGCGTCAAGAGGAATTGATTTTGTTGGAGTGGATCATGTCATTCTCTTCGATTTTCCACGTGATCCCAGTGAATATGTTCGTCGTGTTGGAAGAACTGCTAGAGGAGCTGGTGGAAAGGGCAAGGCATTCATATTTGTAATTGGCAAGCAAGTATCACTTGCAACAAAGATAGTGGAAAAAAACAAAAAGGGTCATCCACTGCATGATGTGCCATCTGCCTATGAACTGATGAAGTAG 2043 0.4048 MLLSKYPHLLLNSNPNCLHSINESYGRVFFFSNTNSILCSESQNLQKSCGHALLVKAGNSPQPKDILGFWKLTGTNGMSDTYKSRATNSAIEGLTGNDISVIVNTNSVPTSEGDSSGSLGRLKAEKVKALVRKRYSRLKRQNREENGELDMEQEQLEVHLNPTKQKSIGEKGTERSFTWAKKSAKAYQSNRNAVFTQNKVHSEDIGFQKFQNTPKKSETTSDVNSRVLDAHDSDSHLRGWGNGRSVDMFRSRTPEISKGRGKGFANSDFFSRKSFKDIGCSEYMIESLKKQHFPRPSHIQAMAFKPVFNGKSCIIADQSGSGKTLAYLLPVIQLLRQEELDRKIEPASQAPRVVILAPTAELASQVLNNCRAMSRSGVPFKSIVVTGGFRQRTQLESLEQGVDVLIATPGRFLYLIKEGFLQLTNLRCAVLDEVDILFSNEDSEAALKCLISSSPVTTQYLFVTATLPGDIYNKIIENFPDCQVIMGPGMHRISTGLEEVLVDCSGDDGTEKNPDTAFLNKKSALLQLLEANRVEKTIVFCNRIETCRKVENILKRTDRKGTLVQVLPFHAAVTQEQRISNMEKFKHSQSDGISQFLVCTDRASRGIDFVGVDHVILFDFPRDPSEYVRRVGRTARGAGGKGKAFIFVIGKQVSLATKIVEKNKKGHPLHDVPSAYELMK* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02132 680 Gene3D - 512 677 IPR027417 -
Pte3g02132 680 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 273 301 IPR014014 GO:0003724
Pte3g02132 680 CDD DEADc 284 479 - -
Pte3g02132 680 SMART ultradead3 292 500 IPR014001 -
Pte3g02132 680 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 524 680 IPR001650 -
Pte3g02132 680 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 304 485 IPR014001 -
Pte3g02132 680 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 307 648 IPR027417 -
Pte3g02132 680 CDD SF2_C_DEAD 497 648 - -
Pte3g02132 680 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 169 677 - -
Pte3g02132 680 Coils Coil 135 155 - -
Pte3g02132 680 Gene3D - 257 485 IPR027417 -
Pte3g02132 680 Pfam Helicase conserved C-terminal domain 521 637 IPR001650 -
Pte3g02132 680 SMART helicmild6 548 638 IPR001650 -
Pte3g02132 680 Pfam DEAD/DEAH box helicase 298 471 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02132 Pte-Chr3 36915207 36920729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02132 274 659 Eukaryotic Initiation Factors Gene Family AT3G19760 27.202 9.66e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02132 K13179 - qsu:111998557 682.559