Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02128 ATGGACGAAAAAGGCGCTGACGGTCTTCGTACTGTCGAGGCCGTTTTCCAAGATTTGAATGGTCGTAGAACCGCCTTGATAAAAGCTCTCACCACCGATGTTGAAGAATTCTTTAAGCAGTGTGATCCTGAAAAGGACAATCTTTGCCTGTATGGATATCCTAATGAGCAATGGGAAGTACGTTTGCCTTCTGAAGTAGCTTTTCTTCCTGAACCTGCAATAGGCATTAACTTTGCTAGAGATGAGACTCCAAGGACACACTGGCTGTATCTCGTTGCTTTCCACTGTGACAGTTGGTTAATTTCACTGGCTTTCTTTCGTGGGGCTCGATATAAGTTTTGTAAGGATGACAGGGAACGCCTATTCACTATGATCAATGATCTTCCCACTGTATTTGAGGTTGTGAGAAATTCAGAAGGGGTACGTACGTACGACTTTCTTTCTTATAGCTCGAAAGCGGAAGATGAAGATGAACATGGTGAGAGCTTGTGTGGGGCATGTGGTGTGGGCGAGGGTTCTAATGAATTCTGGATATTATGTGACATATGTGAGAAATGGTTTCATGGCAAGTGTGTGAAGGTCACACCAGCTATGGCTAAGCAGATTCAGGAGTACGAATGCCCCTCATGCAGTGAGAAGAAAGCTCAACCTTGA 654 0.445 MDEKGADGLRTVEAVFQDLNGRRTALIKALTTDVEEFFKQCDPEKDNLCLYGYPNEQWEVRLPSEVAFLPEPAIGINFARDETPRTHWLYLVAFHCDSWLISLAFFRGARYKFCKDDRERLFTMINDLPTVFEVVRNSEGVRTYDFLSYSSKAEDEDEHGESLCGACGVGEGSNEFWILCDICEKWFHGKCVKVTPAMAKQIQEYECPSCSEKKAQP* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02128 217 ProSiteProfiles Zinc finger PHD-type profile. 161 213 IPR019787 -
Pte3g02128 217 Pfam PHD-finger 164 212 IPR019787 -
Pte3g02128 217 FunFam PHD finger alfin-like protein 156 212 - -
Pte3g02128 217 Pfam Alfin 11 136 IPR021998 GO:0006355|GO:0042393
Pte3g02128 217 ProSitePatterns Zinc finger PHD-type signature. 164 210 IPR019786 -
Pte3g02128 217 SMART PHD_3 163 211 IPR001965 -
Pte3g02128 217 SUPERFAMILY FYVE/PHD zinc finger 154 214 IPR011011 -
Pte3g02128 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 212 IPR013083 -
Pte3g02128 217 PANTHER CPG BINDING PROTEIN 10 216 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02128 Pte-Chr3 36902334 36904236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02128 10 218 Alfin-like Transcription Factor Family AT3G42790 53.112 4.08e-84 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte3g02128 Alfin 1.8e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02128 K26274 - sind:105161902 282.722