Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02100 ATGCCTCCACGAACAGTGAAAAGAGGAGGAGCTGCCGCATCGAAGCGTAACTCGCGAGCTCAGAAGACTCAACAACCTCAGCAACAAGTACAGGAAGGTAACCCTGTCGTTGAAGAACCTGTGAAGGTCGAAGACAAGATTATTGTTGTCGAAGAAAATGATGATGAGGTCAAGGTTGATGAGAAATCTGTTGATGAAGACAAATCTGTCATTGAAGAGAAATCTATTGTTGAGGAAAACCCTATTGTGGGGGATCATCTGGCAGTGGCGACTGACGTTGACAGAAAGTGTGATGTCAATGGATCAGTTCAGATCAGAATGACAGAGGAAGATGAAGTTAAAGATTCAGTAGATGAATATGAGAGAGATGAACGCTTAGACCTGGAGGATAATGATCCTGAGTATGAACCTGAGGAGTTCGGAGGTGTTGATTATGATGACAAGGAAATTGAACAAGAAGATGTTCAAGAAGTTGAAGAAGAAATTGAGGGAGAACCTGATGAAACGGTGGGTGAAGATTGTGATATGGTTGAAGAGGAAGTTGAGGAGGTCACTGAAGAGCTTGAAGTTGGAGAGGATGATGAGCATATTGGTAAGGAGCACCAACATGAGGCTGATCATGAGCTCGGGCATGAGAATGATCATCTTGAGCATACTGGAATGGTTGATGCAGAGGAAGAGGAGCACCACGATGTTGTGAAGGAGAGGCGGAAAAGAAAGGAATTTGAGGTATTTGTTGGTGGCTTGGACAAAGATGCTACAGAAGATGATCTTCGGAAGGTTTTTAGTGCTGTTGGTGAGGTTACTGAAATAAGGTTGATGATGAACCTTCAAACTAAGAAGAACAAGGGTTTTGCATTCTTGCGTTTTGCAACTGTGGAACAAGCAAAGCGAGCTGTAACAGAGCTTAGAAACCCTATGATTAATGGGAAACAATGTGGTGTTAGTCCAAGTCAGGACAGTGATACCCTCTTTTTGGGTAATATATGCAAGACATGGACAAAAGAATATTTAAAGGAAAAGTTGAAACATTACGGAGTTGACAATGTTGAAGATATAACACTGGTAGAAGATGGAAACAATAAGGGCATGAACCGTGGATTTGCTTTTCTGGAGTTTTCGTCTCGTTCAGATGCTATGGATGCCTTTAAGCGTCTTCAGAAGCGAGATGTAGTTTTTGGAGTGGATAGGCCTGCAAAGGTCTCTTTTGCAGATTCTTTTATTGACCCGGGTGATGAAATTATGTCGCAGGTTAAGACTGTCTTCATCGATGGTTTGTCTGCTTCTTGGGACGAGGATCGTGTCAAGGATTTTCTCAAAAAATATGGAGAAATTGAGAAGATCGAGCTTGCTAGGAATATGCCAACTGCCAAGAGGAGGGATTTTGGATTCGTTACATTTCATTCGCATGATGCAGCTGTAACATGTGCTAAAAGCATTAACAATGCAGAGTTGGGTGAAGGAGACAGCAAGGCTAAAGTTAGGGCCCGATTATCAAGACCCCTTCAGAGAGGCCACGGTGGAAAACATGTTGGCCGTGGGGACTACCATTCTACTCGTGCAGTAGGAAGGTCTGTCGGTGGTTCTTGGACTCGTCATAGCTCCCATAGTTTTCCATCACATCATGTAAGAAGTGTGCCTGCTCGTTTTCCACCTTCTAGCTTGAAGAGACCTGTCGGGGTTAGAGACAGACGACCTTTGATATCCATGCCTATAAAGTCGAGACCAATGCCTCCTCCTCCTAGAGCATACAATAGGAGACCTACTGTTCCATCATATCCAAAGAGCAGCATGAAGAGAGATTATGGTCGGCGTGAGGAACTCCCCCCTCCTAGGAGCAGAGCTGCTGCTGCTGCTTATGTCTCTAGGATGGCTCCAGAGAGACGCCCTTCATATAGAGAAAGTTATCCAGCTCGGGGTCCTGTTTACTCTGATCTACCCAGGAGCACGTCTAGCACAGCACCTAGGAGGGGTTACGTCGACGATGGTTATGGACAGAGGTTTGAGAGACAACCTCATCCAGCAACATATCGTGAACGTGGACGGGACTATGATACTATGTCTGGATCAAAACGTCCATACAGTGCCATTGATGATGTTCCTCCCCGATACTCTGATCCCAATGTTCGCCAATCTAGAGCACGGTTGGAATATGACTATGCTGGGAGCAGTTCACAGTTTTCAGATGCCTATAGTGACAGGTTCAGCAGATCTAATTTGGGATACAGTGCCAGTAGAAGTTCTCTGTCAGGTCAAGAGGCACATGGAATGTATGCAAGCCGCCAGGGAATGGGTTATGGAGGAGGTTCTTATGTTGGCAGTGATGTCGGTATGTACTCATCAAGCTATGGCAGTGATTACTTGCCTCGTGGGAGTGATGTTGGTCGTGGCTCTTATTCGTCAATGTATCCTGGTCGTGGCATGAACAACAGTAGTTACATGAGTAGTAGTTCTGGATCCTACTATTGA 2469 0.45 MPPRTVKRGGAAASKRNSRAQKTQQPQQQVQEGNPVVEEPVKVEDKIIVVEENDDEVKVDEKSVDEDKSVIEEKSIVEENPIVGDHLAVATDVDRKCDVNGSVQIRMTEEDEVKDSVDEYERDERLDLEDNDPEYEPEEFGGVDYDDKEIEQEDVQEVEEEIEGEPDETVGEDCDMVEEEVEEVTEELEVGEDDEHIGKEHQHEADHELGHENDHLEHTGMVDAEEEEHHDVVKERRKRKEFEVFVGGLDKDATEDDLRKVFSAVGEVTEIRLMMNLQTKKNKGFAFLRFATVEQAKRAVTELRNPMINGKQCGVSPSQDSDTLFLGNICKTWTKEYLKEKLKHYGVDNVEDITLVEDGNNKGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMSQVKTVFIDGLSASWDEDRVKDFLKKYGEIEKIELARNMPTAKRRDFGFVTFHSHDAAVTCAKSINNAELGEGDSKAKVRARLSRPLQRGHGGKHVGRGDYHSTRAVGRSVGGSWTRHSSHSFPSHHVRSVPARFPPSSLKRPVGVRDRRPLISMPIKSRPMPPPPRAYNRRPTVPSYPKSSMKRDYGRREELPPPRSRAAAAAYVSRMAPERRPSYRESYPARGPVYSDLPRSTSSTAPRRGYVDDGYGQRFERQPHPATYRERGRDYDTMSGSKRPYSAIDDVPPRYSDPNVRQSRARLEYDYAGSSSQFSDAYSDRFSRSNLGYSASRSSLSGQEAHGMYASRQGMGYGGGSYVGSDVGMYSSSYGSDYLPRGSDVGRGSYSSMYPGRGMNNSSYMSSSSGSYY* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02100 822 FunFam RNA recognition water-stress protein1 409 531 - -
Pte3g02100 822 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 421 486 IPR000504 GO:0003723
Pte3g02100 822 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 244 312 IPR000504 GO:0003723
Pte3g02100 822 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 390 IPR000504 GO:0003723
Pte3g02100 822 SMART rrm1_1 243 316 IPR000504 GO:0003723
Pte3g02100 822 SMART rrm1_1 323 402 IPR000504 GO:0003723
Pte3g02100 822 SMART rrm1_1 420 495 IPR000504 GO:0003723
Pte3g02100 822 CDD RRM_SF 244 316 - -
Pte3g02100 822 SUPERFAMILY RNA-binding domain, RBD 236 320 IPR035979 GO:0003676
Pte3g02100 822 MobiDBLite consensus disorder prediction 501 710 - -
Pte3g02100 822 Coils Coil 174 194 - -
Pte3g02100 822 MobiDBLite consensus disorder prediction 662 687 - -
Pte3g02100 822 CDD RRM_SF 421 486 - -
Pte3g02100 822 MobiDBLite consensus disorder prediction 16 34 - -
Pte3g02100 822 Gene3D - 322 405 IPR012677 -
Pte3g02100 822 MobiDBLite consensus disorder prediction 110 169 - -
Pte3g02100 822 Gene3D - 164 317 IPR012677 -
Pte3g02100 822 Gene3D - 409 529 IPR012677 -
Pte3g02100 822 FunFam Heterogeneous nuclear ribonucleoprotein Q 322 405 - -
Pte3g02100 822 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 320 IPR000504 GO:0003723
Pte3g02100 822 MobiDBLite consensus disorder prediction 572 587 - -
Pte3g02100 822 CDD RRM_SF 324 402 - -
Pte3g02100 822 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 406 IPR000504 GO:0003723
Pte3g02100 822 SUPERFAMILY RNA-binding domain, RBD 321 486 IPR035979 GO:0003676
Pte3g02100 822 MobiDBLite consensus disorder prediction 122 169 - -
Pte3g02100 822 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 419 501 IPR000504 GO:0003723
Pte3g02100 822 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 20 815 - -
Pte3g02100 822 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02100 Pte-Chr3 36043885 36050178 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02100 244 481 Eukaryotic Initiation Factors Gene Family AT1G49760 23.108 6.19e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02100 - - cave:132189564 935.25