Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02096 ATGGCTTCACAAGTTCATATCTTTGAACAAAATCTCCCTGCAAAGACTACTCACTTTTACGCAGTGATTGTTCCTCAGAATCTCAAGGATGGAAAACTTATGATTCCCAAAGAGTTTGTGCAGAAATATCGTGGAAGGTTATCCGATTTCACATTTCTGAAGCTTCCAAATGGTGCTGAATGGAAAGTAGATATCACCCAATACAATGGTGAAGTTTGGTTACAAAATGGATGGAAGGAATTTGCAGACTATCATTCCCTCACCTATGGACAATTGCTGGTTTTTAGATATGAAGGGCCTTCCCAATTCCATGTTCTCATTTTCGACATGAGTGCAGTAGAAGTTGAATATCTTGTCAATCAATTAAGTGGGAATGGGGCTAATGATAGAGATCATGAAGAATTTATAGAGAGTGATGAAGATGTTGAAATTTCGAATGTAGTTCCAAAAAGAAGAGGGACAACACCAGAGCCTTTCCAACATCATAAGAAGATGAGAAGCGACGACGAAGGTGAAAAAACTAAGAGCCTTTCTGATTTACAGGACAAGTTTGGAGGGAGAATGCCGAGAGTGGAGGTGGAGAATAAGTATGAGGGCAATGGTGTGAAGATTGAACGTGCTAAAATTGTCAGTGCAAGAGCTACAGCTCTTGAAAGAGCTACTGCTTTCAAATCCAAAAATCCATTCTTCCTGATAGTGATGCAACCGACCACAGTGACAACTGCAGCCTATATAACAGTTCCATGCAGGTTTGTGGATAGATATATTGATCTCAGAAGGAAAGCAGGAGTTGTCATCCTTCGGATTCCACAGCGGAAAGATTGGCAGGTCAAATATACTGTCAAGCATGGAAGAACACACAGAATGATGAAGCTAACTGTTGGGAGGAAGCAATTCATTAAGGAAAACAAGCTTCAAGTAGGTGATGTGTGTGTATTTGAGTTGGTTGAGACAACAAAGCTCATATTCCAAGTCCACATTTTCAGGATTGCTCAAATGGGTCATACCTTGTTTGATGATACTGCTAAACCAGATGAAGTTGGGAAAACCATGGAAGTGGAAATCAAAAGAGAAACTACTTCAATCGGTGAGGATGAATGTGGGGTTGCTGAGCTATATCATCCAGTTACATCAAAGGACTTGCATGGTTCACCTCGTTATGCGAGATATGAATCCAGACAGTTGAAACGAAATTGGCAAGAAAAACACACACCAGGTTTTCAGAGATCATCATCCTATTGGAATTCCAGAGCAGCTTTGGCTTTTGCAGCAGCAAGCAAATTTGACTCAAAAAATCCTTTCAACATTGTTAGCGTCAGATCACTGTCATCATTGAGAGTAAGAAGAGGTTTCATGAAAGGGTGTGGCACACAAAATGGAGGGACAGTGATTCTACAAGTTGGGACAAGATCATGGCCTGTAAAGGTGCTGAATTATCCTCACATATCAGTGGCATGGCTGTCTGCAGGTTGGTCTGCATTTGCAAGGGAAAATAATCTCAAACCAGGAGATGCTTGTGTGTTTGAGCTGATTAAAAATGATGAGGGTGTGCTAAAAGTGACTATTTTCAGGTGCTTCGCCAATGAAGATGCATAA 1596 0.4079 MASQVHIFEQNLPAKTTHFYAVIVPQNLKDGKLMIPKEFVQKYRGRLSDFTFLKLPNGAEWKVDITQYNGEVWLQNGWKEFADYHSLTYGQLLVFRYEGPSQFHVLIFDMSAVEVEYLVNQLSGNGANDRDHEEFIESDEDVEISNVVPKRRGTTPEPFQHHKKMRSDDEGEKTKSLSDLQDKFGGRMPRVEVENKYEGNGVKIERAKIVSARATALERATAFKSKNPFFLIVMQPTTVTTAAYITVPCRFVDRYIDLRRKAGVVILRIPQRKDWQVKYTVKHGRTHRMMKLTVGRKQFIKENKLQVGDVCVFELVETTKLIFQVHIFRIAQMGHTLFDDTAKPDEVGKTMEVEIKRETTSIGEDECGVAELYHPVTSKDLHGSPRYARYESRQLKRNWQEKHTPGFQRSSSYWNSRAALAFAAASKFDSKNPFNIVSVRSLSSLRVRRGFMKGCGTQNGGTVILQVGTRSWPVKVLNYPHISVAWLSAGWSAFARENNLKPGDACVFELIKNDEGVLKVTIFRCFANEDA* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02096 531 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 423 524 IPR044837 -
Pte3g02096 531 Gene3D - 415 526 IPR015300 -
Pte3g02096 531 Gene3D - 210 333 IPR015300 -
Pte3g02096 531 MobiDBLite consensus disorder prediction 150 176 - -
Pte3g02096 531 SMART B3_2 19 111 IPR003340 GO:0003677
Pte3g02096 531 SMART B3_2 230 331 IPR003340 GO:0003677
Pte3g02096 531 SMART B3_2 434 526 IPR003340 GO:0003677
Pte3g02096 531 Pfam B3 DNA binding domain 25 109 IPR003340 GO:0003677
Pte3g02096 531 Pfam B3 DNA binding domain 230 329 IPR003340 GO:0003677
Pte3g02096 531 Pfam B3 DNA binding domain 438 524 IPR003340 GO:0003677
Pte3g02096 531 Gene3D - 12 112 IPR015300 -
Pte3g02096 531 CDD B3_DNA 438 524 IPR003340 GO:0003677
Pte3g02096 531 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Pte3g02096 531 CDD B3_DNA 228 329 IPR003340 GO:0003677
Pte3g02096 531 SUPERFAMILY DNA-binding pseudobarrel domain 225 332 IPR015300 -
Pte3g02096 531 CDD B3_DNA 18 109 IPR003340 GO:0003677
Pte3g02096 531 ProSiteProfiles B3 DNA-binding domain profile. 430 526 IPR003340 GO:0003677
Pte3g02096 531 ProSiteProfiles B3 DNA-binding domain profile. 230 331 IPR003340 GO:0003677
Pte3g02096 531 SUPERFAMILY DNA-binding pseudobarrel domain 429 524 IPR015300 -
Pte3g02096 531 SUPERFAMILY DNA-binding pseudobarrel domain 15 111 IPR015300 -
Pte3g02096 531 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02096 Pte-Chr3 35934302 35937173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02096 228 524 B3 DNA Binding Superfamily AT3G18990 24.419 5.17e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte3g02096 B3 1.3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02096 - - jre:108998184 282.722