Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02007 ATGAAGAAGCATAAGTGCAAGCTTTGCTTCAGGAACTTCGCTAATGGTAGAGCATTAGATGGGCATATGAGGTCTCATATGATCCCTCGTCCTCCAAAGCCAGTAAAATCCCCACCAACACAAATAAGTGACGGGGTTGTGCCAGCTTCATTTTCGTCATCTTCTGAAGACGAAGAAGGACAAGGAGGAGAGAAGAGTTTGAGTTATGGTCTGAGAGAGAACCCCAAGAAAAGCGTTAGTATTGTAGATCTTGATATGGAATGTGCTGTTGATGCTTGGTCTGTTGTTCTTCAAGATAGAGAGAGTGAGACTGAGTCATCCAAGAATCCAATTCGGAGACGATCCAGAAGGATTATGACCAATTCAGTTACTTTGGAAGAAGATCACCATGAAACCATGAAAAAGGTCAGGACTTTGATCAATCCAACAAGTGAAGCTGAATCATTTGCAGAACCTGAGCCTGCAAGTTCTATTTCTGATGATACAAAAGAAGATGTCGCTTTTTGTCTTATGATGTTGTCAAGAGACAAATGGAAAAGGCAAAGAGATGAAGTTGAGGAAGTCTATAATGATAATGTTGACCACGGCTATGATGAAGAGGAGGAAGTAGAAGAAGAGGATGAAGCGGTGATCAGATTTTTTGAATCCAGCGACAACACAGACGAGCCGAAACCTAGAAAAAATCGAGTACGAGGAAAATACAAGTGTGAAACATGCAACAAAGTTTTTCGATCTTATCAAGCGTTAGGAGGACATAGAGCAAGTCACAAAAACATTAAACTTTGTACTAGAGTGAATAAGCAAAAGCTGGAGAAAGATAATGCTGGCACGTCAGTTTCGATGGAGGATAATAAGAAAACTCATGAATGTCCAGTTTGCTTTAGGATTTTCTCATCAGGGCAAGCATTAGGAGGCCATAAGAGAATCCATGTAATCTATACTTTAGCAACTTCAGAACCAACCAGAAGCTCCATTAAGTTTGGAGACAGCTTGATAGATCTTAATCTTCCTGCTCCAATTGAAGATGATGAGGGTTAG 1038 0.4056 MKKHKCKLCFRNFANGRALDGHMRSHMIPRPPKPVKSPPTQISDGVVPASFSSSSEDEEGQGGEKSLSYGLRENPKKSVSIVDLDMECAVDAWSVVLQDRESETESSKNPIRRRSRRIMTNSVTLEEDHHETMKKVRTLINPTSEAESFAEPEPASSISDDTKEDVAFCLMMLSRDKWKRQRDEVEEVYNDNVDHGYDEEEEVEEEDEAVIRFFESSDNTDEPKPRKNRVRGKYKCETCNKVFRSYQALGGHRASHKNIKLCTRVNKQKLEKDNAGTSVSMEDNKKTHECPVCFRIFSSGQALGGHKRIHVIYTLATSEPTRSSIKFGDSLIDLNLPAPIEDDEG* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02007 345 SUPERFAMILY beta-beta-alpha zinc fingers 234 310 IPR036236 -
Pte3g02007 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 261 IPR013087 -
Pte3g02007 345 ProSitePatterns Zinc finger C2H2 type domain signature. 290 310 IPR013087 -
Pte3g02007 345 SMART c2h2final6 288 310 IPR013087 -
Pte3g02007 345 SMART c2h2final6 234 256 IPR013087 -
Pte3g02007 345 SMART c2h2final6 4 26 IPR013087 -
Pte3g02007 345 MobiDBLite consensus disorder prediction 21 71 - -
Pte3g02007 345 SUPERFAMILY beta-beta-alpha zinc fingers 2 31 IPR036236 -
Pte3g02007 345 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 343 IPR044303 GO:0006355
Pte3g02007 345 Pfam C2H2-type zinc finger 288 310 - -
Pte3g02007 345 Pfam C2H2-type zinc finger 4 28 - -
Pte3g02007 345 Pfam C2H2-type zinc finger 234 257 - -
Pte3g02007 345 ProSitePatterns Zinc finger C2H2 type domain signature. 236 256 IPR013087 -
Pte3g02007 345 Gene3D Classic Zinc Finger 231 310 - -
Pte3g02007 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 288 310 IPR013087 -
Pte3g02007 345 MobiDBLite consensus disorder prediction 43 57 - -
Pte3g02007 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Pte3g02007 345 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02007 Pte-Chr3 32499797 32501052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02007 1 344 C2H2 Transcription Factor Family AT3G60580 39.718 4.10e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte3g02007 zf-C2H2_6 2.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02007 - - qsa:O6P43_017371 352.443