Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02006 ATGAGGAAGCTCCTCAACTCCTCCTACTCCCCGTACACTTCAGGTTGGACTCAAGCTACTGCTACCTGGTATGGAAGCCCTGATGGAGCTGGAAGTGATGGGGGTGCATGTGGATATGGTAGTGCAGTAGAACAACCCCCATTCTCTGCAATGGTATCTGCTGGAGGTCCTAACTTATACAAAGGAGACAAAGGCTGTGGTGCTTGTTATGAGGTGATGTGCACTAGTAAAGCTAATGCTTTGTGTTCAGGGAACCCTGTGACTATTGTTCTCACTGATAACTGTCCTGGTTGTGGTAATGACCATTTTGACTTAAGTGGCAGTGCTTTTGGTGCCATGGCCCGTTCTGGTCAATCTGGGAAACTGCGTGATGCTGGTCTACTGCAGATCCAATATAGACGTGTTGTTTGCAACTACCCTGGACGTAAAATTGCTTTTCGCATTGATTCTGGATCGAATTCATATTATTTTGCTACCCTGATTGAATATGAAGATGGAGATGGTGATCTTGCAAGAGTTGAACTCAAACAGGCTCTTGACTCAGACTCATGGCTTTCCATGCAGCAGTTGTGGGGTGCAGTCTGGAAGCTGGACGCAGGCTCAACGCTAAGAGCTCCTTTCTCTCTCCGCCTAACTGCACTTAACTCCGGCAAGACTGTTGTCGCGTACAACGTGATCCCGGCAGGCTGGACACCTGGTCAAACTTATAGATCTGTGGTGAATTTTGACACATAA 735 0.4748 MRKLLNSSYSPYTSGWTQATATWYGSPDGAGSDGGACGYGSAVEQPPFSAMVSAGGPNLYKGDKGCGACYEVMCTSKANALCSGNPVTIVLTDNCPGCGNDHFDLSGSAFGAMARSGQSGKLRDAGLLQIQYRRVVCNYPGRKIAFRIDSGSNSYYFATLIEYEDGDGDLARVELKQALDSDSWLSMQQLWGAVWKLDAGSTLRAPFSLRLTALNSGKTVVAYNVIPAGWTPGQTYRSVVNFDT* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02006 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 34 142 IPR007112 -
Pte3g02006 244 Gene3D - 138 239 IPR036749 -
Pte3g02006 244 CDD DPBB_EXPB_N 16 137 - -
Pte3g02006 244 PRINTS Major pollen allergen Lol pI signature 146 161 IPR005795 GO:0005576|GO:0019953
Pte3g02006 244 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576|GO:0019953
Pte3g02006 244 PRINTS Major pollen allergen Lol pI signature 193 210 IPR005795 GO:0005576|GO:0019953
Pte3g02006 244 PRINTS Major pollen allergen Lol pI signature 54 65 IPR005795 GO:0005576|GO:0019953
Pte3g02006 244 PRINTS Major pollen allergen Lol pI signature 162 177 IPR005795 GO:0005576|GO:0019953
Pte3g02006 244 PRINTS Major pollen allergen Lol pI signature 92 107 IPR005795 GO:0005576|GO:0019953
Pte3g02006 244 SUPERFAMILY Barwin-like endoglucanases 7 141 IPR036908 -
Pte3g02006 244 PANTHER EXPANSIN-B3 15 242 - -
Pte3g02006 244 Gene3D - 4 137 IPR036908 -
Pte3g02006 244 SMART dpbb_1 52 132 IPR007112 -
Pte3g02006 244 SUPERFAMILY PHL pollen allergen 142 238 IPR036749 -
Pte3g02006 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 155 238 IPR007117 -
Pte3g02006 244 Pfam Expansin C-terminal domain 144 227 IPR007117 -
Pte3g02006 244 PRINTS Expansin/Lol pI family signature 33 51 IPR007118 GO:0005576
Pte3g02006 244 PRINTS Expansin/Lol pI family signature 15 30 IPR007118 GO:0005576
Pte3g02006 244 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Pte3g02006 244 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Pte3g02006 244 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Pte3g02006 244 PRINTS Expansin/Lol pI family signature 125 141 IPR007118 GO:0005576
Pte3g02006 244 Pfam Lytic transglycolase 53 132 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02006 Pte-Chr3 32381423 32383407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02006 2 242 Expansin Gene Family AT1G65680 63.374 2.66e-111 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02006 - - zju:125423879 360.533