Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01996 ATGCGTACCGAAATCATCATCAGAGCCACAAGAACCCAGAACGTTCTAGGTGAGAAGGGTAGGAGGATTAGAGAACTTACTTCTGTGGTGCAGAAGAGGTTTAAGTTCCCCGAAGGTAGCGTGGAACTTTATGCTGAGAAAGTCAATAACAGGGGTCTCTGTGCTATTGCTCAAGCAGAATCCCTCCGTTACAAGCTACTTGGTGGCCTTGCTGTTAGGAGGGCCTGCTATGGTGTTTTGAGATTTGTGATGGAAAGTGGTGCCAAGGGATGCGAGGTGATTGTTAGTGGCATGTTAAGGGCTCAGCGTGCTAAATCTATGAAGTTCAAGGATGGATACATGATTTCTTCTGGCCACCCAGTGAATGAATATGTCGACGCTGCAGTCAGACATGTCTTCTTGAGGCAGGGTGTGCTTGGTATCAAGGTTAAAATCACGCTTGACTGGGAGCCCAAGACACCACTACCTGATCTCGTCACTATCCATCCTCCCAAGGATGAGGAAACCTACATTCTTCCTCCCATCGCAGCCGTTCCAACTGAAATTGAGGTCCCTGTTGCTTAA 564 0.4787 MRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPEGSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGMLRAQRAKSMKFKDGYMISSGHPVNEYVDAAVRHVFLRQGVLGIKVKITLDWEPKTPLPDLVTIHPPKDEETYILPPIAAVPTEIEVPVA* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01996 187 NCBIfam 30S ribosomal protein S3 1 162 IPR005703 GO:0003735|GO:0006412|GO:0015935
Pte3g01996 187 ProSitePatterns Ribosomal protein S3 signature. 104 140 IPR018280 -
Pte3g01996 187 Gene3D - 1 49 IPR015946 -
Pte3g01996 187 FunFam 40S ribosomal protein S3 50 178 - -
Pte3g01996 187 Pfam KH domain 2 50 IPR004044 GO:0003723
Pte3g01996 187 Pfam Ribosomal protein S3, C-terminal domain 63 145 IPR001351 GO:0003735|GO:0006412
Pte3g01996 187 SUPERFAMILY Ribosomal protein S3 C-terminal domain 50 148 IPR036419 -
Pte3g01996 187 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 1 56 IPR009019 GO:0003723
Pte3g01996 187 Gene3D - 50 170 IPR036419 -
Pte3g01996 187 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 2 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01996 Pte-Chr3 32070412 32072086 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01996 1 182 Cytoplasmic Ribosomal Protein Gene Family AT2G31610 82.447 3.46e-110 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01996 K02985 - dct:110106767 331.257