Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01984 ATGCTCAGCGACGCACCCAACTTGTCCCTTCCTACCCTGACAACGTTTGTTAGCTCCGGCTCACCTATGGCTTTTCCTTCCTCCCTGGATGAAAAAACTGATTGGGGTCATCTGCTTGACTTTTCCTGTAACTACAGCTTCAAGTCTGAGAACACCACCACAACAACTTCAACTACTACCACCCATTCCACAACCACTACTACATCATCAGACGACGGCGATGGATGCAACTGGATGGACACTTGGTCCCCAGTTGTCGATTGGGATGCCCTTCCCAATGGTGGTGACGAATTCCAGGACCTCATTGAATCGATGATGGTCGATGTTGAAGAGGAAGGTTCCAACTCTGCAATATCTGCTTCAACAGGTGACATGATGATTAGTGATGAAGAAACCGCAGGCCAGGAAGACTTCAAAGGTCTTAGACTTGTACACCTGTTGATGGCAGCTGCAGAAGCTCTCTTTGGTTCAAACAAGAACCGTGATCTGGCTCGGGTGATATTGGTTCGGCTCAAGGAGTTGGTTTGCCCAACTGAAGGTGCTAACATGGAGAGATTAGCTGCTTATTTCACCGAAGGCTTACAAGTTTTGCTAGACGGCACAGGCAGTGGTGGACATGGCAGCAAGCAAATCCTCAGCAATAGTACTTTCCACCATGATGGACATAATCAAACAGACATCTTAGCCGCATTTCAATTACTTCAAGACATGACTCCAGTTGTTAAATTCGGACATTTCACTGCAAATCAAGCAATCTTGGAGGCTGTATCCCACGATAGGAGGATTCACATAGTGGACTATGATATCATGGAAGGTATCCAATGGGCTTCTTTGATGCAAGCCTTGGTGTCCAGGAAAGAAGGGCCACCGGCTCCTCATCTTAGGATTACGGCATTGTCAAGAGGTGGCGGAAGTAGTCGGAGATCATTCGGAACGGTTCAAGAGACGGGTCGCCGGTTGGTTGCATTCGCAGCTTCAATTGGTCAACCTTTCTCGTTTCATCAATGTAGGCTAGACTCAGACGAAACGTTCAGACCATCGGCTTTGAAGTTAGTACGAGGTGAGGCTTTGATTTTCAACTGTATGCTACACTTACCTCACTCTATGAATTACCGGGCACCCGATTCAGTTGCTTCTTTTTTAAGTGGATCGAAGAGCTTGAACCCAAGATTATGGACACTTGTAGAAGAGGAGGTGGGTCCTATTGGAGATACAGGGTGTTTGGGTAGGTTCGTGGACTCATTGCATCATTACTCAGCCATATACGATTCATTGGAGGCAGGGTTCCCTTTGCAAAGCCGAGCTCGTGCCTTAGTGGAGCGGGTATTCTTGGGGCCCAGGATATCCGGTTCAGTGACCCGAATATACAGAAGCATGATGGAGAAGGAGAGAGGGGCATGGGGAGAGGTGTTGAGTGAAATTGGGTTCAAACCAAAGTCAATAAGTTTTGCCAATCATTGCCAAGCAAAGCTTTTGTTAGGGTTATTCAATGATGGGTATAATGTGGAGGAATTGGGTAATAATAGATTGGTCTTGAAATGGAAGAGTAGGCGATTGCTCTCTGCTTCTATTTGGTACTCTTCCTCTGAATTGTGA 1596 0.4674 MLSDAPNLSLPTLTTFVSSGSPMAFPSSLDEKTDWGHLLDFSCNYSFKSENTTTTTSTTTTHSTTTTTSSDDGDGCNWMDTWSPVVDWDALPNGGDEFQDLIESMMVDVEEEGSNSAISASTGDMMISDEETAGQEDFKGLRLVHLLMAAAEALFGSNKNRDLARVILVRLKELVCPTEGANMERLAAYFTEGLQVLLDGTGSGGHGSKQILSNSTFHHDGHNQTDILAAFQLLQDMTPVVKFGHFTANQAILEAVSHDRRIHIVDYDIMEGIQWASLMQALVSRKEGPPAPHLRITALSRGGGSSRRSFGTVQETGRRLVAFAASIGQPFSFHQCRLDSDETFRPSALKLVRGEALIFNCMLHLPHSMNYRAPDSVASFLSGSKSLNPRLWTLVEEEVGPIGDTGCLGRFVDSLHHYSAIYDSLEAGFPLQSRARALVERVFLGPRISGSVTRIYRSMMEKERGAWGEVLSEIGFKPKSISFANHCQAKLLLGLFNDGYNVEELGNNRLVLKWKSRRLLSASIWYSSSEL* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01984 531 Pfam GRAS domain family 143 525 IPR005202 -
Pte3g01984 531 ProSiteProfiles GRAS family profile. 134 526 IPR005202 -
Pte3g01984 531 MobiDBLite consensus disorder prediction 50 71 - -
Pte3g01984 531 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 111 522 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01984 Pte-Chr3 31872988 31874583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01984 130 527 GRAS Transcription Factor Family AT5G41920 34.085 2.80e-53 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pte3g01984 GRAS 4.5e-96 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01984 - - tcc:18592298 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01984 3 31872988 31874583 Pte3g01984 3 31872988 31874583 RCT