Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01962 ATGGCGGCAGCAGATTTACAGTTACCTCCTGGCTTCAGATTTCATCCTACCGATGAGGAGCTTGTGTTACACTACCTCTGCCGGAAATGTGCCTCCCAATCCATTGCAGTTTCGATTGTTGCTGAAATCGATCTTTACAAGTTTGATCCATGGGAACTTCCAGGTCTGGCTTTGTATGGAGAGAAAGAATGGTATTTTTTCTCTCCCCGCGACCGGAAATACCCTAACGGGTCACGACCCAACCGTGCTGCTGGATCCGGTTACTGGAAAGCAACCGGAGCTGATAAACCTATTGGGAATCCGAAACCAGTGGGAATCAAGAAAGCTCTGGTTTTCTACTCAGGGAAAGCACCTAAAGGAGAGAAAACCAACTGGATCATGCACGAGTATCGCTTGGCCGATGTCGACCGTTCTGCTCGCAAGAAGAACAGCTTGAGGCTGGATGATTGGGTGCTATGCCGTATATACAACAAGAAAGGCAATATCGAGAGACGACCACAAGGACTTGTCAAGAAGACGGAGCCTATGGCCATGGAGGAGCAGAAGCCGTTTATTCTCAAGAGTGAAGCAGCAACTTTGCCACCACCTTCTCTGGCTCCGGCTCCGGCTCCTGCTCCGGCTCCGTCGGTTACGGCGAATGATTGCTTTCACTTCGACACGTCAGATTCGATTCCGAAGCTGCACACGGACTCGAGCTGCTCGGAGCAGGTGGTGTCGCCCGAGTTTGCAAGCGAGGTGCAGAGCGAGCCCAAGTGGAATGAGTGGAACAGGAACGGCCAGGGTTTTCTGTACAATTACATGGATGCCACACTGGGAAACGACCTATCGGCACAGTACCAGTGTGGGGATCAGATGTCTCCGTTACAGGACATTTTCATGTACCTGCAGAAGCCGTTCTGA 900 0.5133 MAAADLQLPPGFRFHPTDEELVLHYLCRKCASQSIAVSIVAEIDLYKFDPWELPGLALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGNPKPVGIKKALVFYSGKAPKGEKTNWIMHEYRLADVDRSARKKNSLRLDDWVLCRIYNKKGNIERRPQGLVKKTEPMAMEEQKPFILKSEAATLPPPSLAPAPAPAPAPSVTANDCFHFDTSDSIPKLHTDSSCSEQVVSPEFASEVQSEPKWNEWNRNGQGFLYNYMDATLGNDLSAQYQCGDQMSPLQDIFMYLQKPF* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01962 299 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
Pte3g01962 299 FunFam NAC transcription factor 17 162 - -
Pte3g01962 299 Pfam No apical meristem (NAM) protein 9 132 IPR003441 GO:0003677|GO:0006355
Pte3g01962 299 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Pte3g01962 299 Gene3D NAC domain 17 163 IPR036093 GO:0003677|GO:0006355
Pte3g01962 299 PANTHER NAC TRANSCRIPTION FACTOR 56 8 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01962 Pte-Chr3 31403977 31407257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01962 6 300 NAC Transcription Factor Family AT1G01720 71.803 6.11e-148 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte3g01962 NAM 3.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01962 - - tcc:18592373 458.759