LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte3g01956	ATGAGTTTCCTTAGGACCTCTGCTTTGAACCATTGTCTTGTCACATACCCTTCACTGAGGTGGATGCCTTGTCAAAGTTGGGAGTTCCTTCGATGGCCAGGTTTTGATGGGTTCTTGAGACTTTTGGTGGTGTTGCTTCTGTGGTCTACATTTTCTGAGCTTCGCTACATTCCATCATCTTCCATGTACCCTACTCTTCGTGTGGGCGATCGAGTTCTTGTTGAGAAGGCATCTTATTACTTGAAGAGACCTGCGATAAATGATATTATTACATTTCGAAATCCAACATCGACCTCAGGAGACAAGGCGGAAGAAGTTTTTATTAAAAGAATCATTGCAAAAGAAGGGGATTCAGTTGAGATTGATCATGGGTGGCTCTATGTCAATGGCATTCCACAGAAAGAAGATTTTATAGCACAGCAGCCAACATACTCAACTAACTTGACATTTGTACCAGAAGGTCATGTATACGTGTTGGGGGACAACCGGAATAACAGCTATGATTCCCATGTTTGGGGACCCCTTCCCGTTAAAAACATCCTTGGAAGATTTGTCATGCGTTGTTACAGACCACCATATAACTGA	585	0.4274	MSFLRTSALNHCLVTYPSLRWMPCQSWEFLRWPGFDGFLRLLVVLLLWSTFSELRYIPSSSMYPTLRVGDRVLVEKASYYLKRPAINDIITFRNPTSTSGDKAEEVFIKRIIAKEGDSVEIDHGWLYVNGIPQKEDFIAQQPTYSTNLTFVPEGHVYVLGDNRNNSYDSHVWGPLPVKNILGRFVMRCYRPPYN*	195

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte3g01956	194	CDD	S26_SPase_I	53	183	IPR019533	GO:0004252\|GO:0006465
	Pte3g01956	194	ProSitePatterns	Signal peptidases I serine active site.	59	66	IPR019756	GO:0004252\|GO:0016020
	Pte3g01956	194	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	107	119	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pte3g01956	194	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	50	66	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pte3g01956	194	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	151	170	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pte3g01956	194	Pfam	Signal peptidase, peptidase S26	39	187	IPR019533	GO:0004252\|GO:0006465
	Pte3g01956	194	NCBIfam	signal peptidase I	40	189	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pte3g01956	194	FunFam	Peptidase/ serine-type peptidase	59	188	-	-
	Pte3g01956	194	SUPERFAMILY	LexA/Signal peptidase	51	188	IPR036286	-
	Pte3g01956	194	Gene3D	Umud Fragment, subunit A	59	190	-	-
	Pte3g01956	194	PANTHER	SIGNAL PEPTIDASE I	36	190	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pte3g01956	194	ProSitePatterns	Signal peptidases I signature 3.	156	169	IPR019758	GO:0004252\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte3g01956	Pte-Chr3	31317387	31322892	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte3g01956	62	189	MADS-box Gene Family	AT1G29960	30.233	6.28e-11	55.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte3g01956	K03100		-	cave:132183620	302.753

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pte3g01956	3	31317387	31322892	Pte3g01956	3	31317387	31322892	RCT