Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte3g01948 | ATGGGGTTTGAGGAGGGAACTAGCAATGGCGACAATATGGATTGTGCTGAAGGAATTAAGTGTCTGAAAAGTGAGACATTGAGTAATGGTATTGGAAATGTCGTTGAAGAAGGGTCTGGTGGAATTGATGGTTTTCGTACCTACAAGAGGCGAAAGGGTGTGAAGTCGAGTTCAGGGACCAAAGCTGAAGATGGTTGCAGAATGTATTTTGAAGCAGCCAGTAATCTAGAAGATCAGGCTGTAAACAAACCATGTGATGTAGTTTTAGGCAATGCATCATGCCGGCAATTCCACCATCCCTTTGATGTTTCAAGGGATAGCTTGTCAAGACTCTTGAAAAATGTACAGAAGAAAACATATCCTTCAGTATATGACATTTTAATGCAGAAGGAGTCTTATCACAATGATAAAGAAGCACATGAATGCTCTTCACAAACAGGTTGGAACTCTGATGGATCCCGAAATATGGGTAATGGACATGCTAGTCACAAGTGTGGTAGATCTCTGAAGGAGTCAAAGCTTCATAATACCACGGAAATATGTCAACGGGCTTTGCACAATATTTTAATCTCAGAGCAGTTCACCCTATTGTCTAAACTACTCTATGAAAGCTTCCATGGAACTAAGGCTGAGAATGTAGTTGACTTCAGTCATATCACCTCGAAGATGAAAGAGGGAGCTTATGAGCAGTCACCAACACTTTTCTTGTCAGACATTCAACAGATATGGAGAACGCTTCAAGAGAGTGGAACGAGAATTGTTTCTCTTGCTAAGAGCCTTTCAGACTTATCAAGAACTTCCTATTATGAACAGTTGGGAGTTCCATTGCATGTCCCTCGTGAAGAGGAAAGGCAGGAGTACCGTGCACAAGAATCTGACTCACACACAAAAACAGAGCCAACAGAGGACTGCAATCTATATAAGATTTGCAGTTGTAGACGGTGTGGAGGGAAGGCAAACGGAAAGGATTGTTTGGTTTGTGATTCATGTGAAGAGATGTATCATGTCTCTTGTATTGAGCCTGCTGTGAAAGAGATTCCCAACCGAAGTTGGTACTGTGCCTATTGCACTGCCAATGGAATTGGCTCACCACATGAAAACTGCCTGGTGTGTGATCGTTTGAATGCACCCAGAACCCTTAACCACGAAAATAATGACTCAAACCTCCCTGCAAATGAGGCAATGCATAATGAATTGGAAGAGAATTCCAATTCCAGTGCATATAGCAGACTTAAAGTGTCCAGAGACAGGAAGAACATGTTCGTTTGCAAAATTTGTGAAAATGAGGTGGGAGATGAAGAGTTTAGGGTTTGTGGTCATGCTTTCTGCCCCAATAAATGTTACCATATAAGGTGCTTGACAAATCAACAACTGAAATTGTATGGACCCAAGTGGTACTGCCCTTCCTGTTTGTGCAGAGGTTGCCTTACAGATCGAGATGACGATAAGATTGTCCTGTGTGATGGCTGTGATCATGCATACCACATTTATTGCATGGATCCACCTCTGGCCTCAATTCCAAAAGGGAAGTGGTTCTGCAGGAAATGTTTTGCAGGGATTCAAGCTATACGTAAGGTAAAAAGGGCATACGAGAGTTTGGAAAACAGACAAAAAAAGATGGTTCAAAATGGTACAAGGATATATGAAGTTGACAAGAAGTGGAATACTAAACGTGGACATGAATTGGAGAAAGGCGGAGGAGTAGACATGCTTCTGAATGCGGCCAAAACACTTGAATTTTGA | 1743 | 0.4194 | MGFEEGTSNGDNMDCAEGIKCLKSETLSNGIGNVVEEGSGGIDGFRTYKRRKGVKSSSGTKAEDGCRMYFEAASNLEDQAVNKPCDVVLGNASCRQFHHPFDVSRDSLSRLLKNVQKKTYPSVYDILMQKESYHNDKEAHECSSQTGWNSDGSRNMGNGHASHKCGRSLKESKLHNTTEICQRALHNILISEQFTLLSKLLYESFHGTKAENVVDFSHITSKMKEGAYEQSPTLFLSDIQQIWRTLQESGTRIVSLAKSLSDLSRTSYYEQLGVPLHVPREEERQEYRAQESDSHTKTEPTEDCNLYKICSCRRCGGKANGKDCLVCDSCEEMYHVSCIEPAVKEIPNRSWYCAYCTANGIGSPHENCLVCDRLNAPRTLNHENNDSNLPANEAMHNELEENSNSSAYSRLKVSRDRKNMFVCKICENEVGDEEFRVCGHAFCPNKCYHIRCLTNQQLKLYGPKWYCPSCLCRGCLTDRDDDKIVLCDGCDHAYHIYCMDPPLASIPKGKWFCRKCFAGIQAIRKVKRAYESLENRQKKMVQNGTRIYEVDKKWNTKRGHELEKGGGVDMLLNAAKTLEF* | 581 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte3g01948 | 580 | ProSiteProfiles | Zinc finger PHD-type profile. | 309 | 359 | IPR019787 | - | |
| Pte3g01948 | 580 | FunFam | PHD finger protein EHD3 isoform A | 199 | 360 | - | - | |
| Pte3g01948 | 580 | Coils | Coil | 523 | 543 | - | - | |
| Pte3g01948 | 580 | MobiDBLite | consensus disorder prediction | 280 | 300 | - | - | |
| Pte3g01948 | 580 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 472 | 518 | IPR013083 | - | |
| Pte3g01948 | 580 | PANTHER | OS02G0192300 PROTEIN | 226 | 386 | - | - | |
| Pte3g01948 | 580 | Pfam | PHD-finger | 472 | 516 | IPR019787 | - | |
| Pte3g01948 | 580 | Pfam | PHD-finger | 312 | 358 | IPR019787 | - | |
| Pte3g01948 | 580 | ProSitePatterns | Zinc finger PHD-type signature. | 310 | 356 | IPR019786 | - | |
| Pte3g01948 | 580 | ProSiteProfiles | Zinc finger RING-type profile. | 423 | 470 | IPR001841 | - | |
| Pte3g01948 | 580 | SMART | PHD_3 | 474 | 517 | IPR001965 | - | |
| Pte3g01948 | 580 | SMART | PHD_3 | 422 | 471 | IPR001965 | - | |
| Pte3g01948 | 580 | SMART | PHD_3 | 311 | 357 | IPR001965 | - | |
| Pte3g01948 | 580 | MobiDBLite | consensus disorder prediction | 144 | 165 | - | - | |
| Pte3g01948 | 580 | ProSitePatterns | Zinc finger PHD-type signature. | 467 | 516 | IPR019786 | - | |
| Pte3g01948 | 580 | ProSiteProfiles | Zinc finger PHD-type profile. | 469 | 519 | IPR019787 | - | |
| Pte3g01948 | 580 | SUPERFAMILY | FYVE/PHD zinc finger | 414 | 471 | IPR011011 | - | |
| Pte3g01948 | 580 | Gene3D | - | 237 | 360 | - | - | |
| Pte3g01948 | 580 | SUPERFAMILY | FYVE/PHD zinc finger | 294 | 357 | IPR011011 | - | |
| Pte3g01948 | 580 | SUPERFAMILY | FYVE/PHD zinc finger | 472 | 521 | IPR011011 | - | |
| Pte3g01948 | 580 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 384 | 471 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte3g01948 | Pte-Chr3 | 31215526 | 31223236 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte3g01948 | 463 | 542 | C2H2 Transcription Factor Family | AT3G01460 | 36.250 | 6.76e-14 | 73.6 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Pte3g01948 | PHD | 2.5e-12 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte3g01948 | - | - | qsa:O6P43_015116 | 665.611 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pte3g01948 | 3 | 31215526 | 31223236 | Pte3g01948 | 3 | 31215526 | 31223236 | RCT |