Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01930 ATGCCTCTCTTGAAGAACCCTAACCATGTTCTTGAAAATGCTTTGAAAATATTAGAGATGATAAGAGCATGTCTTGAAGAGGACACTAAGCAGGTGGCAAGTCGATGGGCAGAAACATTTGGAATGGATGAGAAGACTGAAAATTTCTCTAGCCATCGCATTGTCCCAAATCTGGCGGTTCATGCACATTTCTACTTGTACTTTTCAGAGACACTTCATGAATTGAGAATATTTTTATTAGTTCATGAAAAAATTGTCAGAAAATTATACACTAAAAAAACTATGCCACGCCCTACTTTTCATAAGCTTATTGTTCCAGCAACCATCCAAGCAAGACACCTGAGGATCCCAGAAAGTTTCCTGAGGAAATTCAGGGGCGATCTCTCAAACGTTTCAACCCTTACCCTTCCAACAGGTGTTGTCTGGCGCATTGGTTTGAAGAAAGTAGACAATAAAGTTTGGTTTTATGATGGTTGGCGGAGCTTTGTTAATGTTTACTCCATCCGTGTTGGATACTTTCTGCTATTCAGATATGAAGGAAACTCATCTTTCACTGTTCATATTTTCAATCTAATTGCATCTGAGATAAATTATAAATCTCCCACGCTAGTTAATGCTCAAGGATCTTTATTTGCCAATGAATGTCGGGTATTTGATGAAATGGAAGATGAAGACCCTCTTGACATCCTCGGTTCTCTGTCAGGCTTGGCTCATGGATCTTCACAGAATAAGAGTTTAGCTGGATCTACAGATCAAATGACATCTGGGACGTGTTATGGTAGTTCTCCAGCACTGCAGAACTTATTCAATGGGTCAAAACTTGATTGCTTAAACTGGGGAGAAGGTGGGAACCTGCAAACTCCAAAGGGGGCTCAAAATTCTACAAAGGATAAAGGTGTTCAATTTAATCCAACTGAATTTAAAAAATCTGCTGATGAGGTAAAATTGCTTGGCTCTAAACCAGAGACACCAAAAACCCAAAAACGAGGAAGGAAGCGCAAAGTTGACCCTAATGGGCAGGAAACATCTGCTCAACATGGCGATGAAGAAGTGGAAATACGGTTCAGATTTTATGAAAGTGCCTCTGCAAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGGGCTATAAATTCAGCTAAAGCGTTTGAGCCTCCCAACCCTTTCTGCAGGGTAGTCCTTCGGCCATCCTATCTGTACAGAGGATGCATAATGTATTTGCCCTCCTGCTTTGCGGAAAAGCATCTCAATGGGGTTTCAGGATTCATCAAACTACAGCTTAATGATGGAAAGCAGTGGCCAGTGAGATGTCTTTATAGAAGTGGAAGAGCGAAATTAAGCCAGGGGTGGTATGAATTTACATTGGAGAACAACATAGGAGAAGGTGATGTGTGCGTGTTTGAGCTGCTGACGACAAGGGATCTTGTGCTGAAGGTTACAGTATTCCGAGTGGTGGAGGAGGCAGCACTTTTGGCCCACCCTTTGCAGTCGCATAACCTGAGCCAGAGCAAAGTGATTAGGAGCTAG 1527 0.4191 MPLLKNPNHVLENALKILEMIRACLEEDTKQVASRWAETFGMDEKTENFSSHRIVPNLAVHAHFYLYFSETLHELRIFLLVHEKIVRKLYTKKTMPRPTFHKLIVPATIQARHLRIPESFLRKFRGDLSNVSTLTLPTGVVWRIGLKKVDNKVWFYDGWRSFVNVYSIRVGYFLLFRYEGNSSFTVHIFNLIASEINYKSPTLVNAQGSLFANECRVFDEMEDEDPLDILGSLSGLAHGSSQNKSLAGSTDQMTSGTCYGSSPALQNLFNGSKLDCLNWGEGGNLQTPKGAQNSTKDKGVQFNPTEFKKSADEVKLLGSKPETPKTQKRGRKRKVDPNGQETSAQHGDEEVEIRFRFYESASARKRTVTAEERERAINSAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQLNDGKQWPVRCLYRSGRAKLSQGWYEFTLENNIGEGDVCVFELLTTRDLVLKVTVFRVVEEAALLAHPLQSHNLSQSKVIRS* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01930 508 MobiDBLite consensus disorder prediction 308 325 - -
Pte3g01930 508 SMART B3_2 390 485 IPR003340 GO:0003677
Pte3g01930 508 SMART B3_2 100 192 IPR003340 GO:0003677
Pte3g01930 508 PANTHER B3 DOMAIN-CONTAINING 94 473 - -
Pte3g01930 508 MobiDBLite consensus disorder prediction 285 301 - -
Pte3g01930 508 Gene3D - 367 487 IPR015300 -
Pte3g01930 508 ProSiteProfiles B3 DNA-binding domain profile. 99 192 IPR003340 GO:0003677
Pte3g01930 508 MobiDBLite consensus disorder prediction 285 346 - -
Pte3g01930 508 Gene3D - 91 191 IPR015300 -
Pte3g01930 508 CDD B3_DNA 388 483 IPR003340 GO:0003677
Pte3g01930 508 ProSiteProfiles B3 DNA-binding domain profile. 390 485 IPR003340 GO:0003677
Pte3g01930 508 SUPERFAMILY DNA-binding pseudobarrel domain 383 483 IPR015300 -
Pte3g01930 508 SUPERFAMILY DNA-binding pseudobarrel domain 96 190 IPR015300 -
Pte3g01930 508 Pfam B3 DNA binding domain 393 483 IPR003340 GO:0003677
Pte3g01930 508 Pfam B3 DNA binding domain 101 190 IPR003340 GO:0003677
Pte3g01930 508 CDD B3_DNA 114 190 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01930 Pte-Chr3 30887817 30892442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01930 95 484 B3 DNA Binding Superfamily AT3G18990 56.010 2.54e-135 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte3g01930 B3 1.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01930 - - qsa:O6P43_011659 550.821