Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01921 ATGGAAGAATGCATAACCAGCGACTGTGATTATTCTTACTCCGATCCGGAGTCCCTTGACGGAATTGAAAATGATGACTCCGGTTTTCAGTTGGTTCAAACAAAGGGTCCGAGCACCCAGCATTTGCAGGTAATTACGAAGGAATCACTTTTAGCTGCCCAGAGGGAGGATTTACGTAGAGTGATGGACATGCTATCTTTGCGAGAGCACCATGCACGTACCCTGCTTATATATCACCGTTGGGATGTTGAGAAGTTGTTCTCTGTGTATGTTGATAAGGGGAGATCTTTCTTATTTGGTCAAGCTGGTGTTAGCGTGAATGAGCATCTAGGACAGGACTCATCATCTCCTTCTACTACAACTTGCGAAATCTGCTTTGATGATATTCCTAGTTATAAAGCAACCAGAATGGATTGCGGTCATTGCTTTTGCAACGCCTGCTGGACAGAGCATTTTGTTGTAAAGATTACAGAGGGCCAAAGTAAGCGAATAAGGTGCATGGCACATAAATGCAATGCTATATGCGATGAAGCTGTTGTTAGAAATTTAGTAAGCAAAAAAGATCCTGGGATGGCAGAAAAGTTTGATCGCTTTCTTCTGGAATCTTATATTGAAGATAATAAGAGGGTAAAATGGTGCCCCAGTATTCCTCATTGTGGGAATGCTATACGTGTTAAGGATGATGACTTAAGTGAAGTAGAGTGTTCATGTGGAATGCAATTTTGCTTTAATTGCTTATCAGAGGCGCATTCACCTTGCTCATGCATGATGTGGGAACTTTGGACCAAGAAGTGTCGTGATGAATCAGAAACTGTTAATTGGATAACAGTTCACACTAAACCTTGTCCAAAGTGCCACAAACCAGTGGAGAAGAATGGTGGTTGCAATCTTGTTAGCTGTATTTGTGGCCAGGCATTTTGTTGGCTTTGTGGTGGAGCCACTGGTCGAGACCATACTTGGTCAAGTATTGCTGGTCATAGTTGCGGTCGCTTCAAAGATCAAGAAAATAAAACTGAAAGGGCAAAGCGGGATCTTTATCGGTACATGCACTATCATAATCGCTACAAGGCTCATACTGATTCCTTTAAGCTCGAAAGTAAACTGAAAGAGACCATACAAGATAAGGTTAATATTTCAGAAGAGAGGGAGTCTAGGCTTAGAGACTATAGCTGGGTGCATAATGGACTCAATCGACTTTTCAGATCTAGGTTTGTGCTTTCATATTCATATCCATTTGCATATTATATGTTTGGAGATGAGCTGTTCAAGGATGAGATGACTCCGAAAGATAGGGAAATAAAACAACATTTATTTGAGGATCAGCAACAGCAGCTGGAAGCAAATGTTGAAAAACTCTCCAAGGTTCTAGAGGAGCCATTTGAACAGTATGGATATGACAGAGTTATGGAGATAAGGATGCAAGTCATTAATCTCTCTGGAATTGTTGATAACCTTTGCCAGAAAATGTATGATTACATTGAGAATGATTTATTGGGTTCTTTACAGCTCGTTATACATAACATTGCTCCATACAAGTCAAAGGGTATTGAGCGGGCATCAGAAATCTCTGCTTGCTGGAGTAATAAAGGCGTCGATAATGTTGGGACAAGTACAACTGAGCATTATAGACCTTCTGGGAGTTCTGAAGAAAGTGGATGTTCTTCTCGTAAACGAGCAAGAAAGGATGATCTTGGCTGTGGCCTTTTTGATTTAAACTTGCCTGCAGAGGTGGTTGACAGGAACTGA 1746 0.4118 MEECITSDCDYSYSDPESLDGIENDDSGFQLVQTKGPSTQHLQVITKESLLAAQREDLRRVMDMLSLREHHARTLLIYHRWDVEKLFSVYVDKGRSFLFGQAGVSVNEHLGQDSSSPSTTTCEICFDDIPSYKATRMDCGHCFCNACWTEHFVVKITEGQSKRIRCMAHKCNAICDEAVVRNLVSKKDPGMAEKFDRFLLESYIEDNKRVKWCPSIPHCGNAIRVKDDDLSEVECSCGMQFCFNCLSEAHSPCSCMMWELWTKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHTWSSIAGHSCGRFKDQENKTERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQDKVNISEERESRLRDYSWVHNGLNRLFRSRFVLSYSYPFAYYMFGDELFKDEMTPKDREIKQHLFEDQQQQLEANVEKLSKVLEEPFEQYGYDRVMEIRMQVINLSGIVDNLCQKMYDYIENDLLGSLQLVIHNIAPYKSKGIERASEISACWSNKGVDNVGTSTTEHYRPSGSSEESGCSSRKRARKDDLGCGLFDLNLPAEVVDRN* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01921 581 Pfam IBR domain, a half RING-finger domain 193 255 IPR002867 GO:0008270
Pte3g01921 581 SUPERFAMILY RING/U-box 117 205 - -
Pte3g01921 581 MobiDBLite consensus disorder prediction 536 552 - -
Pte3g01921 581 CDD Rcat_RBR_ARI1-like 276 329 - -
Pte3g01921 581 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 49 402 IPR031127 GO:0004842|GO:0016567
Pte3g01921 581 SUPERFAMILY RING/U-box 193 261 - -
Pte3g01921 581 CDD RING-HC_RBR_TRIAD1 120 173 - -
Pte3g01921 581 ProSiteProfiles TRIAD supradomain profile. 118 332 IPR044066 -
Pte3g01921 581 ProSiteProfiles Zinc finger RING-type profile. 122 170 IPR001841 -
Pte3g01921 581 CDD BRcat_RBR_ANKIB1 200 264 - -
Pte3g01921 581 Pfam Ariadne domain 332 581 IPR045840 -
Pte3g01921 581 MobiDBLite consensus disorder prediction 536 556 - -
Pte3g01921 581 FunFam RBR-type E3 ubiquitin transferase 116 207 - -
Pte3g01921 581 FunFam RBR-type E3 ubiquitin transferase 251 498 - -
Pte3g01921 581 Gene3D - 251 498 - -
Pte3g01921 581 SMART ibrneu5 263 328 IPR002867 GO:0008270
Pte3g01921 581 SMART ibrneu5 193 255 IPR002867 GO:0008270
Pte3g01921 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 207 IPR013083 -
Pte3g01921 581 SUPERFAMILY RING/U-box 263 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01921 Pte-Chr3 30807179 30811151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01921 62 538 ARIADNE family AT2G16090 72.349 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01921 K11968 - qsa:O6P43_030968 965.296