Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01902 ATGGCGTCCGCAGATGTTGAATTTCGTTGCTTCGTCGGAGGGCTCGCTTGGGCCACCGATAGTGAAGCTCTTTCCAGAGCTTTTTCTCTGCATGGTGAAGTTATCGACTCGAAGGTTATCAACGACCGCGAGACCGGAAGGTCAAGAGGTTTCGGATTTGTGACCTTTGCCAGCGAGGATGACATGAAAAATGCCATTGAAGCCATGAACGGCTTCAACCTTGACGGCCGTAATATAACTGTGAACGAGGCTCAATCACGCGGCGGTGGCGGTGGAGGTGGCGGTGGATATAACCGTAGCAGTGGCGGTGGATACGGAGGTAACAGCGGTGGATACGGAGGCAATGGCGGTGGTTACGGAGGTCGCCGTGAGGGTGGTTATGGCAATCGTAATGGTGGGGGATATGGCGGTAGCCGCGGTGGAGGTTACGGTGGTGGACGTGATCGATACTGA 453 0.5497 MASADVEFRCFVGGLAWATDSEALSRAFSLHGEVIDSKVINDRETGRSRGFGFVTFASEDDMKNAIEAMNGFNLDGRNITVNEAQSRGGGGGGGGGYNRSSGGGYGGNSGGYGGNGGGYGGRREGGYGNRNGGGYGGSRGGGYGGGRDRY* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01902 150 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Pte3g01902 150 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Pte3g01902 150 SMART rrm1_1 9 82 IPR000504 GO:0003723
Pte3g01902 150 Gene3D - 2 105 IPR012677 -
Pte3g01902 150 CDD RRM2_NsCP33_like 9 84 - -
Pte3g01902 150 MobiDBLite consensus disorder prediction 82 150 - -
Pte3g01902 150 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Pte3g01902 150 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 5 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01902 Pte-Chr3 30419434 30420532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01902 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 34.177 3.00e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01902 - K13195 ccaj:109800369 152.14