Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01890 ATGAACGGGGAGCTGCAGTTACCAGATATGTTGCACTGTGTTAATGCCTCTGGAAAGCTGAATGTTAGTGGCAGTGATATGTCATTGTTGGAGAGACAGAGGGCAAGAATAAAGTGGCAGCAAGATCAAAACTTTCAACAAGGAAGCGGAGGAGGAGGGTATATTGGTTGCAGTGCTGCGTTGAATGGAGGGTCGTTCTCTATGCAAGCTCAGGTGGGTCAAGTGCAGAACTTTCAGGATTTCATGGTAGGTGGTGATTCTGTGCTAGCTGAAGCGGTTAATCGTGCGGTGAAGGCCGACCCTGGCTTGGGGAATGAATGGACTCAATTGGGCGACTTTGACATGCCTTGTATGGGATTTGGTTCGTCGGCTGGTTTGGTATCTGGCGTTGCTGCTTCTGACTTTGACATGAATTCTGCAATTACAAGGACTTTAAGCTGTCCTCCTGCTGTGGCTAAGGCAGCAACAGAGGCCAAAAGCAGAGAATCAAGTTTATCAGGGAAGATAAGTTGCCCCACCGGGAGAGAGAGCTTCAAGAAGAGAAAAGCTGGTGGTAGCAAGGTTCAGAGCCCCAAGACTGTTGAAGCAGACGATAGGAAGGACAAGAAGATCAAAGTTTGTGCTGAGGAAGGGGAATCGAAGAACACAAGCTCAAAAAACAATACAGTGACTAATAATAAAAAAAGCAGCAATGAGAATAGCAACAGAGAAACTTCTGATGCTTCAAAAGAAAATTCAAAGGTCTCTGAGGTTCAGAAGCCTGATTATATTCATGTCCGAGCTCGTCGTGGACAAGCAACAGATAGTCACAGTTTAGCCGAAAGAGTTAGGAGGGAAAAAATAAGTGAAAGGATGAAGTATTTGCAAGACTTAGTGCCTGGTTGCAATAAAATTACAGGCAAAGCTGGAATGCTAGATGAGATCATAAACTATGTTCAATCCCTTCAAAGACAAGTAGAATTCCTATCAATGAAATTGGCTGCTGTAAATCCAAGGCTTGACTTCAACATTGATGATCTTTTTGCCAAAGAGGTTTTTCCTGCTTGCCAACCTAGTTTTCCAGCCATGGGGATGTCTGAAATGACTAATTCTGCTTACTTTAAAATCAATCAAGCACAACAAACGGCTGCATATTGTGGAATAGAAATGGCGATGAACCCTTCTGATATGAGTCTAAGAAGAACAATCAGTGCCCCAGTATCCATGCCAGAAACATTTATTGACTCCTCCTCTTGTTACACTGTACTGTTCTTCAACTCTTGA 1263 0.4355 MNGELQLPDMLHCVNASGKLNVSGSDMSLLERQRARIKWQQDQNFQQGSGGGGYIGCSAALNGGSFSMQAQVGQVQNFQDFMVGGDSVLAEAVNRAVKADPGLGNEWTQLGDFDMPCMGFGSSAGLVSGVAASDFDMNSAITRTLSCPPAVAKAATEAKSRESSLSGKISCPTGRESFKKRKAGGSKVQSPKTVEADDRKDKKIKVCAEEGESKNTSSKNNTVTNNKKSSNENSNRETSDASKENSKVSEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDDLFAKEVFPACQPSFPAMGMSEMTNSAYFKINQAQQTAAYCGIEMAMNPSDMSLRRTISAPVSMPETFIDSSSCYTVLFFNS* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01890 420 MobiDBLite consensus disorder prediction 192 212 - -
Pte3g01890 420 Pfam Helix-loop-helix DNA-binding domain 269 316 IPR011598 GO:0046983
Pte3g01890 420 Gene3D - 262 336 IPR036638 GO:0046983
Pte3g01890 420 MobiDBLite consensus disorder prediction 233 255 - -
Pte3g01890 420 MobiDBLite consensus disorder prediction 157 255 - -
Pte3g01890 420 FunFam Basic helix-loop-helix transcription factor 262 334 - -
Pte3g01890 420 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 164 370 IPR024097 GO:0006355
Pte3g01890 420 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 334 IPR036638 GO:0046983
Pte3g01890 420 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 265 315 IPR011598 GO:0046983
Pte3g01890 420 CDD bHLH_AtBPE_like 255 340 - -
Pte3g01890 420 MobiDBLite consensus disorder prediction 213 232 - -
Pte3g01890 420 SMART finulus 271 321 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01890 Pte-Chr3 30102559 30104282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01890 113 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 47.222 3.90e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte3g01890 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01890 - - jre:109013802 434.106