Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01871 ATGGGAAAGAAGAGTAGAGCCAATGAAAACGGCGACAGAGGAAGCGTAGGTCAATACAGTCCTTCAACTGTATTCGTTAGCAACCTTCCATATTCTTTCACCAACTCGCAGCTCGAAGAAACATTCGGTGAAGTTGGACCTGTTAGGCGATGCTTTATGGTTACTACGAAAGGTTCAACCGAGCACCGTGGTTTTGGTTTTGTCCAATTTGCTATTGTAGAAGATGCCAACCGCACCATTGAGTTGAAGAATGGTACTTTTGTTGGTGGTCGGAAAATTTCAGTTAAACATGCCATGCATCGTCCTCCACGTGAACAGAGAAGAACAAAGGAAAATCAAGTGGTGTTGCTTGAAGATATTGCGAGTTCAAAGAATGAGAACGGTGCCAAATTTTCCGAAACAGGGAAAGCTTCTTCTGTGCATAAAGAAAAAGGGAAGCCTATGGAAGAAAAGAAAGCTGATCTTGTCCATGAGCGAGAAAAGGGGGGTTCAGAAAAGCAAAGGGTTGCTAGGACTGTTGTTTTTGGTGGTCTTGTTGATGCTGATATGGCGGAAGAACTTCACTCCAAGGTAAAGGAAATAGGAGATGTATGTTCATGGACGTATCCTCTGCCAAAAGAAGAGATTGAACGGCATGGCTTAATACAAGATGGATGTAAGATGGGTGCTTCAGCTGTGCTCTTCACAAGTGTCAAATCAGCATATGCTGCTGTGGCAATGTTACACAAAAAGGAAGTGAAAGGTGGAATTGTTTGGGCACGGCAACTGGGTGGTGAGGGGTCCAAGACTCAGAAATGGAAACTTATCATCAGAAACCTTTCTTTCAAGGCCAAAGAGCATGAGATAAAAGATATGTTTTTATCAGCCGGATTTGTATGGGATGTGTTTATTCCCCATAAATCAGATACTGGTCAGTCAAAGGGTTTTGCTTTCGTGAAGTTTACATGCAAGAAGGATGCTGAGAATGCCATTCAGAAATTCAATGGATCGATGCTTCATAAACGACCAATAGCTGTTGATTGGGCTGTTCCTAAGAAACTATACAGTAGTGGTGCCGGTCCTGCCCTTCCTTCCGAAGAAGAAACAAAAGAAAATGAGGTGGACGATAAAGATGCTGAAGGTCTCAAGAGTAGTGATGACTCGGAATATGATGTTAATGATATTGGAGGGAATGAGGAAATTACCCCTACTGAAGTCAATTTTGATGAGGAAGCAGACATTTCTCGAAGGGTTCTGAAGAACCTGATTGCATCCTCCACAAAAGAAACCTCCACTAATGCTGATGTTATATTGCCCAACAACGAGGCTATATCAAATGACATTGATGGTGGTGATAAACCATATATTGAGTCCAGTACAGTATCTGGCGTTTTAAAATGTGAAAAAACCCCCAAAAGTAAAGTTGCTGCAAACCCTGATAACAAGGAAGGAGATGATTTACAGAGAACAGTATTTATCAGTAATTTAGCCTTTGACATTAGTAAAGAAGAAGTGGAACAGCGTTTTTCAGCATTTGGAGAAGTAGAGTCCTTCGTTCCAGTCCTCCATCAAGTGACCAAGCGTCCAAAAGGAACTGGCTTTCTTAAGTTTAAAAACGTAGATGTGGCTGATGCTGCTGTTTCAGCTGCTGGGAATGCTGATACTGGTTTTGGGATTTTTCTAAAAGGTAGGCCGTTGACTGTTCTGAAGGCCTTAGATAAGAAGTCAGCTCAAGACAAGGAAGTAGAGAAGTCTAAAACTGAGGTTCATGATCAACGTAACCTTTACCTGGCAAAGGAAGGACTTATTGTTGAGGGAACTCCAGCAGCTGAAGGGGTTTCAGCTAGTGACATGGCAAAACGTCAATCGCTGTATAAGGAAAAGATGATGAAGCTTCAGTCACCAAATTTTCATGTTTCGAAAACTAGACTTGTTATACGCAATTTACCCAAGTCAATGACAGAAAAGGAGCTTAAAAGGCTCTGTATTGATGCAGTTACATCTCGAGCTACCAAGCAGATACCTGTGATCCGACAGATAAAGTCCTTAGAAGATGTGAAGAAAGGAAAAGTAGTCAAAAAACACCATTCACGAGGAGTAGCTTTTGTGGAGTTCTCAGAACATCAGCATGCCCTCGTGGCTCTAAGAGTCCTTAATAACAATCCCGAAACTTTTGGCCCAGAACATAGGCCAATTGTGGACTTCGCTCTTGACAATGTCAAGACACTTAATCATCGCAGAGATAAACTGCAAGCGCAGCTGCAAGCTTCCCAGAACAGACGTGAAAGTAGGGAAGAGAACGATGAACCCCATGGTCCAGACACAAACTCCAATGTGAAGGCCAGAAAACTGAAATCTAGAGCTCACAACACATCTATGAAGGGTTCTGGGCCAGACAACAAAGTGGCAGCAGGAAGCTCTGCACTGAATTCAAGTATTCCTGGAGGAAGAAAACCTGGTAAAAGGCGTAAACATACCCAAGAAAGTGGAAAGAGTGGAACTCTTTCGTCTGAGCGAAATTTTGAAACACAGAAAGAAAACGCACATGTCAGACCAAGTGACAACATAGTTGTGCATCAAACCAGGCATTTGAATCAAGGGTCAAAGAAGAGGAAAATGGAAAAACAGATAGAGCGAAAGGAAGAGAGGGAAAGGAAACGTTCGAAGAAGAATAAGGCCCCTGTGGGAAAAGATGCAGTAGATCAGCTGGACCAGCTAATAGAACAATATAGGTCAAAACTCTCTCAACAGGGCAATCAGGGTCACGGTGAGAAGAAATCTTCGAAACAGCTTAGAAAATGGTTCGAATCATAA 2793 0.4243 MGKKSRANENGDRGSVGQYSPSTVFVSNLPYSFTNSQLEETFGEVGPVRRCFMVTTKGSTEHRGFGFVQFAIVEDANRTIELKNGTFVGGRKISVKHAMHRPPREQRRTKENQVVLLEDIASSKNENGAKFSETGKASSVHKEKGKPMEEKKADLVHEREKGGSEKQRVARTVVFGGLVDADMAEELHSKVKEIGDVCSWTYPLPKEEIERHGLIQDGCKMGASAVLFTSVKSAYAAVAMLHKKEVKGGIVWARQLGGEGSKTQKWKLIIRNLSFKAKEHEIKDMFLSAGFVWDVFIPHKSDTGQSKGFAFVKFTCKKDAENAIQKFNGSMLHKRPIAVDWAVPKKLYSSGAGPALPSEEETKENEVDDKDAEGLKSSDDSEYDVNDIGGNEEITPTEVNFDEEADISRRVLKNLIASSTKETSTNADVILPNNEAISNDIDGGDKPYIESSTVSGVLKCEKTPKSKVAANPDNKEGDDLQRTVFISNLAFDISKEEVEQRFSAFGEVESFVPVLHQVTKRPKGTGFLKFKNVDVADAAVSAAGNADTGFGIFLKGRPLTVLKALDKKSAQDKEVEKSKTEVHDQRNLYLAKEGLIVEGTPAAEGVSASDMAKRQSLYKEKMMKLQSPNFHVSKTRLVIRNLPKSMTEKELKRLCIDAVTSRATKQIPVIRQIKSLEDVKKGKVVKKHHSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVDFALDNVKTLNHRRDKLQAQLQASQNRRESREENDEPHGPDTNSNVKARKLKSRAHNTSMKGSGPDNKVAAGSSALNSSIPGGRKPGKRRKHTQESGKSGTLSSERNFETQKENAHVRPSDNIVVHQTRHLNQGSKKRKMEKQIERKEERERKRSKKNKAPVGKDAVDQLDQLIEQYRSKLSQQGNQGHGEKKSSKQLRKWFES* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01871 930 Gene3D - 469 575 IPR012677 -
Pte3g01871 930 SUPERFAMILY RNA-binding domain, RBD 21 251 IPR035979 GO:0003676
Pte3g01871 930 CDD RRM4_RBM28_like 635 732 - -
Pte3g01871 930 MobiDBLite consensus disorder prediction 350 394 - -
Pte3g01871 930 MobiDBLite consensus disorder prediction 752 774 - -
Pte3g01871 930 PANTHER RNA-BINDING MOTIF PROTEIN 14B 20 930 - -
Pte3g01871 930 Coils Coil 726 760 - -
Pte3g01871 930 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 482 566 IPR000504 GO:0003723
Pte3g01871 930 MobiDBLite consensus disorder prediction 126 163 - -
Pte3g01871 930 SMART rrm1_1 267 340 IPR000504 GO:0003723
Pte3g01871 930 SMART rrm1_1 483 562 IPR000504 GO:0003723
Pte3g01871 930 SMART rrm1_1 636 727 IPR000504 GO:0003723
Pte3g01871 930 SMART rrm1_1 23 96 IPR000504 GO:0003723
Pte3g01871 930 MobiDBLite consensus disorder prediction 783 806 - -
Pte3g01871 930 FunFam RNA-binding motif protein 28 634 729 - -
Pte3g01871 930 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 344 IPR000504 GO:0003723
Pte3g01871 930 MobiDBLite consensus disorder prediction 863 890 - -
Pte3g01871 930 Gene3D - 2 115 IPR012677 -
Pte3g01871 930 SUPERFAMILY RNA-binding domain, RBD 482 713 IPR035979 GO:0003676
Pte3g01871 930 Gene3D - 254 377 IPR012677 -
Pte3g01871 930 MobiDBLite consensus disorder prediction 746 930 - -
Pte3g01871 930 CDD RRM2_RBM28_like 267 343 - -
Pte3g01871 930 Coils Coil 863 885 - -
Pte3g01871 930 MobiDBLite consensus disorder prediction 901 917 - -
Pte3g01871 930 CDD RRM1_RBM28_like 23 101 - -
Pte3g01871 930 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 100 IPR000504 GO:0003723
Pte3g01871 930 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 635 725 IPR000504 GO:0003723
Pte3g01871 930 SUPERFAMILY RNA-binding domain, RBD 262 350 IPR035979 GO:0003676
Pte3g01871 930 Gene3D - 634 729 IPR012677 -
Pte3g01871 930 MobiDBLite consensus disorder prediction 136 163 - -
Pte3g01871 930 Coils Coil 893 913 - -
Pte3g01871 930 MobiDBLite consensus disorder prediction 359 383 - -
Pte3g01871 930 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 93 IPR000504 GO:0003723
Pte3g01871 930 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 337 IPR000504 GO:0003723
Pte3g01871 930 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 484 543 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01871 Pte-Chr3 29762340 29770765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01871 162 564 Eukaryotic Initiation Factors Gene Family AT4G34110 23.671 4.00e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01871 K14573 - zju:107426710 998.423