Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01864 ATGAAGATACAATGCGATGTGTGTGACAAAGTAGAGGCTTGTGTGTTCTCTCCAGCTGACGAAGCTGCCCTCTGCCATGGCCGTGATCGTAGTATTCACCATGCTAACAAGCTTGCTAGCAAGCATACGCGCTTCTCACTTCAACATCCAGATTTGAAAGAAACGGCCCCAATTTGTGATATATGTCAAGAAAGACGTGCTTTTCTGTTCTGCAAAGAAGATAGAGCAATATTATGCAGAGAGTGTGATATATCAATCCATAAAGCCAATGAACTTTTCCAGAAGCATAGCAGGTATATTTTCACTGGTGTGAAGCTTTCTTCCGCAGCTTCAATGTACCAAGCTTCTTCATCATGTAGTAGTATAAATACAGTGAATGATACACTAGTAGGAAAGTCAAACTCATCAGTTGAAAAATCCAGATCAGCTTTTAATGATGTATTCAATTCTCCTTCCATGGCGAACTCTTTGACATCGGCTGGATGCAAGGTTGACGATGACCTTCTTGGTGACACTGCTTGA 522 0.4157 MKIQCDVCDKVEACVFSPADEAALCHGRDRSIHHANKLASKHTRFSLQHPDLKETAPICDICQERRAFLFCKEDRAILCRECDISIHKANELFQKHSRYIFTGVKLSSAASMYQASSSCSSINTVNDTLVGKSNSSVEKSRSAFNDVFNSPSMANSLTSAGCKVDDDLLGDTA* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01864 173 CDD Bbox1_BBX-like 5 47 - -
Pte3g01864 173 Gene3D Classic Zinc Finger 1 97 - -
Pte3g01864 173 CDD Bbox1_BBX-like 58 99 - -
Pte3g01864 173 Pfam B-box zinc finger 56 97 IPR000315 GO:0008270
Pte3g01864 173 SMART bboxneu5 54 101 IPR000315 GO:0008270
Pte3g01864 173 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pte3g01864 173 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 171 - -
Pte3g01864 173 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270
Pte3g01864 173 SUPERFAMILY B-box zinc-binding domain 55 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01864 Pte-Chr3 29692700 29693835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01864 1 148 C2C2-CO-like Transcription Factor Family AT4G39070 57.432 5.38e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte3g01864 zf-B_box 4.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01864 - - qsa:O6P43_002026 198.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01864 3 29692700 29693835 Pte3g01864 3 29692700 29693835 RCT
Pte3g01864 3 29692700 29693835 Pte14g00870 14 30132735 30134954 RCT
Pte3g01864 3 29692700 29693835 Pte2g01271 2 14433181 14434072 RCT
Pte3g01864 3 29692700 29693835 Pte12g00486 12 4392314 4392884 RCT