Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01860 ATGGAAGGCATGGTAGCAAGAGCGTTGAAATCAAGCTTATGCAGAGAACTAGCGGTCGTGAAGTCTCCGCAGCAAGCGTTTTACGAAGAATTCCTGTGTTTGAAATCTAATAATGGAGTTTCTGGTGAGGAATTCTCTGTCGACGATTTGCTTGACTTCTCCAATGGTGAATTCCCTGACGATAATGGACATAATGAGGAAGAAGAGGGAAAAGATAGTTCTTCTGCTTCTTTTTCTTCACAAGACCATATGGAAGACGATAACAACTCTAATTCCTCTGGGTTTTCCGGTGCTGACGACTGGGACTCCATTTTTGCTGGCGGACTTGCGGTACCGACTGATGATATAGCAGAACTGGAGTGGGTTTCTCACTTTGTAGACGATTCTGTACCAGAGCTTTCACTTTTGTGCCCGACAACTATTTCAGGGCAAACGAAGAACACTACTAGTGTTAATTTCATAGGGAAGAGACGGCCAGAAGTACCGGCAGGCAGACCGGGATTAACCAGAGGACTCCCTTTTATGTCACCGGTTCCCGTTAAGCCGAGAAGCAAACGTCAAAGACCAAACACGTCTCGTGTTTGGTTATCCGGGTCATCCTCACAAACGGACTCATCTTCCTCACCTTCGTGTTCTTCCGTGATTATTTCATCGACTCCTTGTCTCATATTGAACCGGGTCAGCGAACCCCCGGTTAAGAAGCAGAAGAAAAGCCCGGAAGGTCAAACCCACGGGTCAAAAACCGGTGACGTGTCTCCATTCCAGCGTCGTTGTAGCCACTGCCAAGTGCAGAAGACCCCACAATGGCGAGCCGGACCGCTGGGTGCTAAAACCCTTTGCAACGCTTGTGGAGTACGTTACAAATCCGGTCGGCTATTTCCGGAGTACCGACCGGCCTGTAGCCCAACGTTCACAAGAGAAATTCACTCCAACAGTCATCGCAAGGTGTTAGAGATGAGGAAGAGGAAGGAGCAGGCAGGACCGGAACCGGGTTTGACTCAAGCCCATATTCAGATGATGGTTCCAAGTTACTGA 1035 0.486 MEGMVARALKSSLCRELAVVKSPQQAFYEEFLCLKSNNGVSGEEFSVDDLLDFSNGEFPDDNGHNEEEEGKDSSSASFSSQDHMEDDNNSNSSGFSGADDWDSIFAGGLAVPTDDIAELEWVSHFVDDSVPELSLLCPTTISGQTKNTTSVNFIGKRRPEVPAGRPGLTRGLPFMSPVPVKPRSKRQRPNTSRVWLSGSSSQTDSSSSPSCSSVIISSTPCLILNRVSEPPVKKQKKSPEGQTHGSKTGDVSPFQRRCSHCQVQKTPQWRAGPLGAKTLCNACGVRYKSGRLFPEYRPACSPTFTREIHSNSHRKVLEMRKRKEQAGPEPGLTQAHIQMMVPSY* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01860 344 FunFam GATA transcription factor 248 333 - -
Pte3g01860 344 MobiDBLite consensus disorder prediction 74 95 - -
Pte3g01860 344 PANTHER GATA TRANSCRIPTION FACTOR 37 328 - -
Pte3g01860 344 Pfam GATA zinc finger 258 291 IPR000679 GO:0006355|GO:0043565
Pte3g01860 344 MobiDBLite consensus disorder prediction 51 95 - -
Pte3g01860 344 PIRSF Txn_fac_GATA_plant 10 343 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pte3g01860 344 ProSitePatterns GATA-type zinc finger domain. 258 283 IPR000679 GO:0006355|GO:0043565
Pte3g01860 344 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 254 315 - -
Pte3g01860 344 CDD ZnF_GATA 257 314 IPR000679 GO:0006355|GO:0043565
Pte3g01860 344 MobiDBLite consensus disorder prediction 157 211 - -
Pte3g01860 344 SMART GATA_3 252 306 IPR000679 GO:0006355|GO:0043565
Pte3g01860 344 MobiDBLite consensus disorder prediction 189 211 - -
Pte3g01860 344 MobiDBLite consensus disorder prediction 229 253 - -
Pte3g01860 344 ProSiteProfiles GATA-type zinc finger domain profile. 256 288 IPR000679 GO:0006355|GO:0043565
Pte3g01860 344 MobiDBLite consensus disorder prediction 59 73 - -
Pte3g01860 344 Gene3D - 253 302 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01860 Pte-Chr3 29602826 29604818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01860 4 345 C2C2-Gata Transcription Factor Family AT5G66320 47.059 6.27e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte3g01860 GATA 4.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01860 - - qsa:O6P43_011543 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01860 3 29602826 29604818 Pte3g01860 3 29602826 29604818 RCT