Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01839 ATGGCGAGGCCAAGATGCTTCATGGACATCAGCATAGCAGGCGAGCTTGAAGGGAGAATAGTGATAGAGCTTTTCAGTGACGTGGTGCCCAAAACTGCTGAGAATTTCCGGGCTCTCTGCACCGGTGAGAAAGGCATTGGCCCCTGTACTGGGGTGCCCCTCCATTTCAAGGGATCCCGCTTTCATCGTGTCATAAAAGGTTTTATGATTCAAGGAGGAGATATATCAGCTGGGGATGGCACTGGCGGAGAATCTATATATGGACTGAAATTTGAAGATGAGAATTTTGAGTTTAAGCATGAAAGGAAAGGTATCCTATCAATGGCTAATGCAGGACCCAACACAAATGGATCTCAATTTTTCATCACTACCACTAGAACTCCCCATCTAGATGGAAAACACGTTGTGTTTGGGAAGGTGATTAAAGGAATGGGAGTGGTTCGTTCTATTGAGCATTTCACAACTGAAGAGGGTGACCGTCCTGCTGCTGATATTACAATTGTGGATTGCGGAGAAATACCCGAGGGGATGGATGATGGAATAAGCAACTTGTTCAAAGATGGTGATTCCCACCCTGATTGGCCAGCGGATCTTGAGGAGAGTCCTGATGAGCTTGAGTGGTGGATGAAGGCTGTAGATTCTATTAAAGCATTGGGTAATGAGAACTACAAGAAACAAGACTACAAGATGGCAGTAAGAAAATACCGGAAGGCTCTACGATACCTGGATATTTGCTGGGAGAAGGATGGAATCGATGAAGAGAAGAGTTTAAGTCTGAGAAAGATCAAGTCTCAGATTTTCACTAACAGCTCAGCTTGCAAATTGAAATTAGGAGATCTGAAGGGAGCATTGTTAGACACTGAATTTGCGATGCGAGATGAAGAGAACAATCCCAAAGCTTTATTCCGCCAAGGCCAGGCATACATGGCTCTTAATGACATTGATGCTGCTCTTGAAAGCTTTAAGAAGGCACATGATCTAGAGCCAAATGATGGTTTGTACAAAATTTTCAGTTCGATTTCTAAACGGTTTCAAATTTTAAAGTTGCCAACAAACTTGAAGAGGATTAAAAAAATTGGCTCACTCATTGTGTGGTGGATCTCAGGTGGAATTAAGAAGGAGCTTAATGCTGCTAAAAAGAAAGTAAGCATTCTCAACTTTGTCATCTCATCTGGCAGCATATTCTTTGGATTCATTATTCTAGTTACTCTAATTGATTCTTTGTGCTTCCTGACAGGTTGCTGA 1245 0.4257 MARPRCFMDISIAGELEGRIVIELFSDVVPKTAENFRALCTGEKGIGPCTGVPLHFKGSRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFEFKHERKGILSMANAGPNTNGSQFFITTTRTPHLDGKHVVFGKVIKGMGVVRSIEHFTTEEGDRPAADITIVDCGEIPEGMDDGISNLFKDGDSHPDWPADLEESPDELEWWMKAVDSIKALGNENYKKQDYKMAVRKYRKALRYLDICWEKDGIDEEKSLSLRKIKSQIFTNSSACKLKLGDLKGALLDTEFAMRDEENNPKALFRQGQAYMALNDIDAALESFKKAHDLEPNDGLYKIFSSISKRFQILKLPTNLKRIKKIGSLIVWWISGGIKKELNAAKKKVSILNFVISSGSIFFGFIILVTLIDSLCFLTGC* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01839 414 SUPERFAMILY TPR-like 208 334 IPR011990 GO:0005515
Pte3g01839 414 SMART tpr_5 212 245 IPR019734 GO:0005515
Pte3g01839 414 SMART tpr_5 298 331 IPR019734 GO:0005515
Pte3g01839 414 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Pte3g01839 414 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Pte3g01839 414 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Pte3g01839 414 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Pte3g01839 414 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Pte3g01839 414 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Pte3g01839 414 ProSiteProfiles TPR repeat profile. 298 331 IPR019734 GO:0005515
Pte3g01839 414 FunFam Peptidyl-prolyl cis-trans isomerase D 1 178 - -
Pte3g01839 414 CDD cyclophilin_ABH_like 4 171 - -
Pte3g01839 414 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Pte3g01839 414 Pfam Tetratricopeptide repeat 298 331 IPR001440 GO:0005515
Pte3g01839 414 Gene3D Tetratricopeptide repeat domain 206 348 IPR011990 GO:0005515
Pte3g01839 414 SUPERFAMILY Cyclophilin-like 2 178 IPR029000 -
Pte3g01839 414 ProSiteProfiles TPR repeat region circular profile. 298 331 - -
Pte3g01839 414 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Pte3g01839 414 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 173 - -
Pte3g01839 414 FunFam peptidyl-prolyl cis-trans isomerase D 210 348 - -
Pte3g01839 414 Gene3D - 1 178 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01839 Pte-Chr3 29247176 29251748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01839 17 170 U-box Gene Family AT5G67530 43.871 6.43e-34 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01839 K05864 - qsu:112010535 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01839 3 29247176 29251748 Pte3g01839 3 29247176 29251748 RCT