Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01837 ATGGCTCAACCAAGTAATGGTGGGGATCTGAATCAGCGTCAGCATCCACAGCAGCAACAGTGGATGCAACCACATCAAAATCAGCAGCAATGGATGGCTATGCAGTATCCAGCCGCAGCTATGGCTATGATGCAGCATCAGATGATGATGTATCCACAGCATTACATGGCTTATGGTCACCATCTTTATCAGCCATCTCAATACCCACTGAAGCCTCAACAGCAGCAGCAGCAGCAAGTATCACCGGATGATGTTAAGACGATCTGGGTCGGAGATCTTCATCATTGGATGGACGAGAACTACCTCCATAGCTGTTTTGCTCACACAGGGGAGGTATTTTCAGTGAAGGTCATACGGAATAAGCAAACAGGGCAGTCAGAGGGTTATGGATTTGTAGAATTCTATTCCCGTGCAACTGCTGAAAAGGTGTTGCAGGGGTATAACACTGCTACAATGCCAAATACGGATCAACCCTTCCGTTTAAACTGGGCTAGCTTTAGTTCTGGTGAACGGAAAACTGATGCTGGATCTGATCTTTCTATATTTGTTGGGGACCTAGCTGCAGATGTTACTGATTCAATGCTGCAGGAAACCTTTTCCAGCAGATTCTCCTCTGTCAAGACAGCAAAAGTTGTGGTTGATTCAAATACTGGTCGATCAAAAGGTTATGGATTTGTGAGATTTGGGGATGAAAATGAAAGAACCAGGGCAATGACTGAAATGAATGGCGTTTATTGTTCAAGTAGACCTATGAGAATAGGGGTTGCAACACCAAAGAAATCATTTGGATATCAACAGCAGTATTCTTCACAAGCTGTTGTGTTGGCTGGTGGACATTCCTCGAACGGTGTTCCCACCCATGTTTCCCAGTCTGGAGGGGATTCAAATAACACAACTTTATTTGTTGGAGGACTGGACTCTGATATCGGCGACGAAGAATTAAGACAACCATTTTTGCAATTTGGTGAGGTTGTTTCTGTGAAAATACCAGCGGGTAAAGGCTGTGGGTTTGTGCAATTTGCTGACAGAAAGAGTGCTGAGGAAGCGTTTCAGGGTTTAAATGGGACAGTCGTAGGCAAGCAGACAGTTCGTCTTGCCTGGGGACGCACTCCGGCGAATAAGCATTGGAGAAATAATTCTGCTCACCAGTGGAATGGACATTATGGAGAGGGGAATGGAGGCTATGGATATGCTGCACCACAAAATCAGGATCTGCACACGCAAGGTGCAGCTGCTACAGGTGAAGAGATATCCTAG 1257 0.4558 MAQPSNGGDLNQRQHPQQQQWMQPHQNQQQWMAMQYPAAAMAMMQHQMMMYPQHYMAYGHHLYQPSQYPLKPQQQQQQQVSPDDVKTIWVGDLHHWMDENYLHSCFAHTGEVFSVKVIRNKQTGQSEGYGFVEFYSRATAEKVLQGYNTATMPNTDQPFRLNWASFSSGERKTDAGSDLSIFVGDLAADVTDSMLQETFSSRFSSVKTAKVVVDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKSFGYQQQYSSQAVVLAGGHSSNGVPTHVSQSGGDSNNTTLFVGGLDSDIGDEELRQPFLQFGEVVSVKIPAGKGCGFVQFADRKSAEEAFQGLNGTVVGKQTVRLAWGRTPANKHWRNNSAHQWNGHYGEGNGGYGYAAPQNQDLHTQGAAATGEEIS* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01837 418 SUPERFAMILY RNA-binding domain, RBD 172 276 IPR035979 GO:0003676
Pte3g01837 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 166 IPR000504 GO:0003723
Pte3g01837 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 370 IPR000504 GO:0003723
Pte3g01837 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 258 IPR000504 GO:0003723
Pte3g01837 418 FunFam Polyadenylate-binding protein RBP47B 85 165 - -
Pte3g01837 418 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 75 374 - -
Pte3g01837 418 SMART rrm1_1 299 366 IPR000504 GO:0003723
Pte3g01837 418 SMART rrm1_1 87 162 IPR000504 GO:0003723
Pte3g01837 418 SMART rrm1_1 180 254 IPR000504 GO:0003723
Pte3g01837 418 SUPERFAMILY RNA-binding domain, RBD 288 396 IPR035979 GO:0003676
Pte3g01837 418 MobiDBLite consensus disorder prediction 1 26 - -
Pte3g01837 418 SUPERFAMILY RNA-binding domain, RBD 55 168 IPR035979 GO:0003676
Pte3g01837 418 FunFam Polyadenylate-binding protein RBP47B 167 269 - -
Pte3g01837 418 FunFam Polyadenylate-binding protein RBP47 280 398 - -
Pte3g01837 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 250 IPR000504 GO:0003723
Pte3g01837 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 363 IPR000504 GO:0003723
Pte3g01837 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 154 IPR000504 GO:0003723
Pte3g01837 418 Gene3D - 178 255 IPR012677 -
Pte3g01837 418 Gene3D - 281 400 IPR012677 -
Pte3g01837 418 CDD RRM2_SECp43_like 178 257 - -
Pte3g01837 418 Gene3D - 85 165 IPR012677 -
Pte3g01837 418 CDD RRM1_SECp43_like 87 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01837 Pte-Chr3 29227944 29232413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01837 85 367 Eukaryotic Initiation Factors Gene Family AT2G23350 28.472 5.03e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01837 - - qsa:O6P43_031013 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01837 3 29227944 29232413 Pte3g01837 3 29227944 29232413 RCT