Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01815 ATGGTGGTACTACTGTACCAGTCCCCCACAGCAGCTGGTGGCCCCAATCAGTTTGTGACGACGTCACTTTATGTTGGGGATCTTGACCAGAACGTAACGGATTCGCAGCTGTACGACCTGTTTAACCAAGTGGGTCAGGTTGTTTCTGTTAGGGTTTGCAGGGATATGACCACCCGGAGATCACTTGGTTATGGTTATGTCAATTATAGCAATCCCCAAGATGCTGCTAGGGCATTGGATATTCTGAGCTTTACTCCTCTCAATTCAAAGACCATTCGAGTAATGTATTCTCATCGTGACCCCAGCATGCGCAAAAGTGGGCTAGGAAATATATTCATCAAGAATCTAGACAAAGCCATCGATCACAAAGCACTACACGACACATTCTCTGCATTTGGGAATATACTCTCTTGCAAGGTAGCTACAGATTCCTCTGGCCAATCGAAGGGTTATGGCTTCGTACAATTTGAAAATGAAGAATCTGCTCAGAAAGCTATTGAGCAGTTGAATGGCATGCTGATGAATGATAAGCAAGTCTATGTGGGGCCATTTTTGCGAAAGCAAGACAGGGAAGGTGCTTCTGATAGGACGAGGTTTAACAATGTTTATGTTAAGAATCTTTCAGAGTCAACCACTGATGAAGACTTGAAGAAAACTTTTGGTGAATTTGGAACTATCACTAGTGCTGTGGTGATGAGGGATGCAGATGGCAAATCTAAATGTTTTGGATTTGTAAACTTCGAGAGTGCTGAAGATGCTGCTAGATCAGTTGAGGGTCTTAATGGCAAAAATTTTGATGGTAAAGAATGGTATGTTGGAAAAGCACAGAAGAAATCTGAAAGGGAAATGGAATTGAAGCTTCAGTTTGAGCAGACTATGAAAGAGGCAGCTGACAAATACCAAGGGGCTAATCTATATGTTAAAAACTTGGACGATACAATTGGTGACGATAAGCTTAAGGAATTGTTTTCACAATTTGGTTCCATTACCTCTTGCAAGGTCATGCGAGATCCAAATGGAATAAGCAGAGGGTCAGGATTTGTTGCATTCTCAACTCCTGAAGAGGCATCTAGAGCGCTTTTAGAGATGAATGGGAAAATGGTTGTTACCAAACCTCTTTATGTTGCTCTCGCTCAAAGGAAAGAAGATAGAAGAGCTAGATTGCAGGCTCAATTTACTCAGATGAGGCCTGTTGCCATAGCTCCATCAGTTGCTCCTCGAGTGCCGATGTACCCCCCTGGTGCTCCTGGAATTGGACAGCAAATATTTTACGGTCAAGCCCCACCTGCTATGATTCCTTCACAGCCTGGATTTGGGTACCAGCAGCAACTTGTGCCAGGTATGAGGCCTGGTGGGTCGCCGATGCCAAACTTCTATGTGCCACTGGTTCAGCAGGGGCAGCAAGGACAGAGACCTGGAGGCAGGCGTGCAGGGGCTCTTCAACAGGTGCACCAGCCTGTTCCCCTGATGCAGCAGCAGATGCTTCCAAGAAACCGTGTCTATCGCTATCCTCCTGGACGCGGTATGCCAGATGCTCCCGTGCCTGGAGTTGGAGGCATGTTTCCCATTCCATATGACATGGGTGGTGTACCTCTCCGTGAGGCTCCAATTTCTCAGCAAATCCCCATTGGGGCTTTGACTTCTGCCCTGGCAAATGCTACTCCTGAGCAGCAAAGAACAATGCTTGGTGAGAGTCTCTACCCTCTTGTGGATCAGCTTGAGCCTGATAATGCAGCAAAAGTAACAGGCATGCTGTTGGAGATGGACCAACCAGAAGTTCTGCACTTGCTTGAATCACCTGAAGCTTTGAAAGCCAAGGTGGCGGAGGCTATGGATGTACTCAGGAATGTTGCACAGCAGCAGCAGACTGCTGAGCAGTTGGCTTCGCTATCACTTAATGACAACCTTGTGTCTTGA 1917 0.4637 MVVLLYQSPTAAGGPNQFVTTSLYVGDLDQNVTDSQLYDLFNQVGQVVSVRVCRDMTTRRSLGYGYVNYSNPQDAARALDILSFTPLNSKTIRVMYSHRDPSMRKSGLGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFENEESAQKAIEQLNGMLMNDKQVYVGPFLRKQDREGASDRTRFNNVYVKNLSESTTDEDLKKTFGEFGTITSAVVMRDADGKSKCFGFVNFESAEDAARSVEGLNGKNFDGKEWYVGKAQKKSEREMELKLQFEQTMKEAADKYQGANLYVKNLDDTIGDDKLKELFSQFGSITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVTKPLYVALAQRKEDRRARLQAQFTQMRPVAIAPSVAPRVPMYPPGAPGIGQQIFYGQAPPAMIPSQPGFGYQQQLVPGMRPGGSPMPNFYVPLVQQGQQGQRPGGRRAGALQQVHQPVPLMQQQMLPRNRVYRYPPGRGMPDAPVPGVGGMFPIPYDMGGVPLREAPISQQIPIGALTSALANATPEQQRTMLGESLYPLVDQLEPDNAAKVTGMLLEMDQPEVLHLLESPEALKAKVAEAMDVLRNVAQQQQTAEQLASLSLNDNLVS* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01815 638 Gene3D - 185 284 IPR012677 -
Pte3g01815 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 99 IPR000504 GO:0003723
Pte3g01815 638 SUPERFAMILY RNA-binding domain, RBD 200 383 IPR035979 GO:0003676
Pte3g01815 638 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 542 619 IPR002004 GO:0003723
Pte3g01815 638 PANTHER RNA BINDING PROTEIN 20 80 - -
Pte3g01815 638 FunFam Polyadenylate-binding protein 286 391 - -
Pte3g01815 638 Gene3D - 538 621 - -
Pte3g01815 638 FunFam Polyadenylate-binding protein 110 183 - -
Pte3g01815 638 Gene3D - 15 109 IPR012677 -
Pte3g01815 638 FunFam Polyadenylate-binding protein 190 285 - -
Pte3g01815 638 Gene3D - 285 388 IPR012677 -
Pte3g01815 638 FunFam Polyadenylate-binding protein 538 620 - -
Pte3g01815 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 380 IPR000504 GO:0003723
Pte3g01815 638 SUPERFAMILY PABC (PABP) domain 485 625 IPR036053 GO:0003723
Pte3g01815 638 Pfam Poly-adenylate binding protein, unique domain 550 614 IPR002004 GO:0003723
Pte3g01815 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 277 IPR000504 GO:0003723
Pte3g01815 638 CDD RRM3_I_PABPs 199 278 - -
Pte3g01815 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 181 IPR000504 GO:0003723
Pte3g01815 638 SUPERFAMILY RNA-binding domain, RBD 21 189 IPR035979 GO:0003676
Pte3g01815 638 SMART rrm1_1 110 182 IPR000504 GO:0003723
Pte3g01815 638 SMART rrm1_1 201 273 IPR000504 GO:0003723
Pte3g01815 638 SMART rrm1_1 304 376 IPR000504 GO:0003723
Pte3g01815 638 SMART rrm1_1 22 95 IPR000504 GO:0003723
Pte3g01815 638 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 22 615 IPR006515 GO:0003723
Pte3g01815 638 CDD RRM4_I_PABPs 302 380 - -
Pte3g01815 638 SMART poly_2 554 617 IPR002004 GO:0003723
Pte3g01815 638 FunFam Polyadenylate-binding protein 8 109 - -
Pte3g01815 638 Gene3D - 110 182 IPR012677 -
Pte3g01815 638 SMART rrm2_1 110 182 IPR003954 GO:0003676
Pte3g01815 638 SMART rrm2_1 201 273 IPR003954 GO:0003676
Pte3g01815 638 SMART rrm2_1 304 376 IPR003954 GO:0003676
Pte3g01815 638 CDD RRM2_I_PABPs 107 183 IPR045305 -
Pte3g01815 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 179 IPR000504 GO:0003723
Pte3g01815 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 371 IPR000504 GO:0003723
Pte3g01815 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 93 IPR000504 GO:0003723
Pte3g01815 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 270 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01815 Pte-Chr3 28663824 28668432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01815 20 637 Eukaryotic Initiation Factors Gene Family AT1G49760 72.381 0.0 880
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01815 K13126 - gmx:100780329 1076.23