Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01813 ATGTCCAAAGTAGAAGAAGAAGGTGCAGGTGGTGATCACCAGAAGAAGCTGGATGAGGTTTTCTTTTGGGAAAACAAATCATGGAGTTTCTCTAATTCAGAAAACTCAAGTGAAATTAGCAAAGACAAATCGAGAACCAAGCCAATGGGAGAGAGTGGCTCTGATGAAAACAAACTCATCGAAATAAAACCTGAGAATGAACTTGCACAGCCTGATCATCCAGATAAGAAGAGAAAACGACCTGCCTGTATGATGCAGGGAAACAACAAAGGATCAAAGGCAGGTAGCAGCAGTGGTGGTTCTGATGAGAAAGGTGGAAAAGCTGCAGCGGGTGAATCAGATCATGAAGTACACATATGGACTGAGAGGGAGAGAAGAAAGAAGATGAGAAACATGTTTTCTAGCCTCCATGATTTACTACCTCAACTTCCTCCCAAGACAGACAAATCTACGATTGTTGATGAAGCGATCAAGCAGATTAAGAACTTGGAGGAGACACTTGAGAAGCTAGAAAAACAAAAACTGGAGAGGCTCCAATCTTCTGCCAGTTTTGCTTATGATCACTCGTCTATTGTCGCTTCCATATGTCTTCCCAATGACTCAAGAGAGTCCTTCATGGCTGATCATGTTTATTCCAATAACTTATCCATTCATGCTGCAACAAATCCTTCTGCAACATCACTTTCATCCCGACATCCGTTATCTTTTAAGACATGGACTTCATCAAATCTAGTCGTGAATGTCTGTGGTGAGGAAGCACATTTTAGTGTGTGCTCGATCAAGATGCCAGGTCTCTGGACAAGCATCTTGTACGTACTGCAGAAGCATAAGATCGAGGTGGTGTCTGCACATCTCAATGGAGACTGTAATCGCTGCATCGGCTTCATCCATGCACGTCAGGTTAAGGGGGCCACGGATCCATACTCACAGGCATTCCCGTCGGTTGAAATGTTTAAGGATGCTGCTGCGGAGATTAACCTAATGTTATGCTGA 993 0.435 MSKVEEEGAGGDHQKKLDEVFFWENKSWSFSNSENSSEISKDKSRTKPMGESGSDENKLIEIKPENELAQPDHPDKKRKRPACMMQGNNKGSKAGSSSGGSDEKGGKAAAGESDHEVHIWTERERRKKMRNMFSSLHDLLPQLPPKTDKSTIVDEAIKQIKNLEETLEKLEKQKLERLQSSASFAYDHSSIVASICLPNDSRESFMADHVYSNNLSIHAATNPSATSLSSRHPLSFKTWTSSNLVVNVCGEEAHFSVCSIKMPGLWTSILYVLQKHKIEVVSAHLNGDCNRCIGFIHARQVKGATDPYSQAFPSVEMFKDAAAEINLMLC* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01813 330 Pfam Helix-loop-helix DNA-binding domain 118 164 IPR011598 GO:0046983
Pte3g01813 330 SMART finulus 121 169 IPR011598 GO:0046983
Pte3g01813 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 179 IPR036638 GO:0046983
Pte3g01813 330 Gene3D - 107 180 IPR036638 GO:0046983
Pte3g01813 330 MobiDBLite consensus disorder prediction 30 116 - -
Pte3g01813 330 CDD bHLH_AtbHLH_like 118 171 IPR045239 -
Pte3g01813 330 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 17 329 IPR044278 GO:0003700|GO:0006355|GO:0009960
Pte3g01813 330 MobiDBLite consensus disorder prediction 38 82 - -
Pte3g01813 330 Coils Coil 153 180 - -
Pte3g01813 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 113 163 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01813 Pte-Chr3 28512626 28515955 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01813 114 329 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 41.322 9.59e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte3g01813 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01813 - - cave:132180014 244.973