Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01811 ATGCAGGGTGAGAGAAGGACCATTAGGTCCTTCCCTGAGGTTTTTGACATTAGACAGGGATCGACTTTCCGAACTGTTGATATAGCTCCACAAACTTCCTTGAATGACATACTGAATCCAGCAGACAGCGAGTTTATGACATCTTTTACTGGGCCAATATGTGACAATAACCTAGATGTTCAGAGATACCGTGGCTTGGATTCTGGTGAATCTAGTTCTAGGTCGAATCTGCAAAACCAGGTCTGTGATGATAGAGCAAAGGTGGAACATCGTTGGCCTTCTACATTTGCTCCGCATTTGGATGGAATCCTCTTGAGAAGAGATCCTACTCAAGGTTCTAGTTCCAGTCATATGATCCACAATGTGAATTTGAACGTGGGATATTTTGGCAATGGTGATAATTATGTGCCGGGCATGAATGCTGAGAACCACTTTGATGCTTGCAAGTCTCATGGGATGGACATGGAGCAGGCATCTTCAACTTTCACTTCACTTGATCATTTAGGACCTTCATCTGGAAATGCTGGGTATGTGATGGATGAAGATGGCAGTGACTCAAGTTCTTTGGGAAGTTTAGGCTCTTCCTGCAAAAGAAAGGCTCTTGAAGGAAGTTCTGGGCATTCTTTTCTGGGTGGAAGCTCAAGCACTCTTCTTGATACAGAAAACAGTGTGTGGAACAATAATAATTTCCCTCGTAGTCCAAGTGTTTCTACACCCTCAACGAACTTTCCAGTTTATGATCCTCTCATATTTCAGAACCCAAGAACTGGGATTGGAATGAGAAGAATGACTTCTGATGCAACCCCTTCAACAATGGTTGCACAGACAGACAAGTCTTCAAGAAATTTTGGTAGGATGGTTGCTTGGAATGACTATGTGCCTCATAATTTGTCATCATCTGGGACTTCTGGAAATTCCCATTTTGGTCCTGCTCACCATATATCCAGAACCATCCCGTCAACTGATTCTCTGGAATTGAGATTAACTGCAGGTGCAACAGCCAGCTCTGGCTCTGTTCAGAACCAGTCAAGTGCCACAAATGCTACTATTTTTCGACCTTCTCTTTGTAATGGATCCAATCCAATGGTCGGCAGTTCATCAATTCTTGTTATACCTGATGAAAGAGCAGTTCGTGAAGAATCAAATCTAAGAATATCTCGTAGAAACAATTTTGAGCGCTCTATATTTGTATCTACAGCTGAAATGAGGAATTCAGGAAATGATCCAGTTGCTTGGAACGTATCTGCTGGAAACATAAGTAATTCCAGACGCATACCTTCAACTGTTCAGGTAGAACCAAGTTCAAACTTCAACCCTTTCCATGCGCCTAACGTTATTCCACACCATAATGGTCCACCACACAATCAGCAAAGATTATCAGATCTTACCCCTTGGTCTTTGTTTCCTTCTGGCTCTGATTCTGGAGTTGATAGTGATCACTTTAGCACATTCTCTGCTTCTTCTACTGCCTCCTCCCAAGGCTCAATTCTGCCTGGCAGATCCATTGGTCAGAGCCACCATCAACCATATCCTAGACCATCATTCTCAATGGAGAGATGTAATAATGACTTTCCTATTGCCACTCATTCTTTAAGGGGTTTTGTTTCTGACATTGAAGGAAGGCGTCGCCTGATCTTGGAGATGCGTCACATACTGAATGCAATGTGTAGGATTGAGAACTTGCATGCTGAGGATTACATACCCTTTGATCCTTTCATTTATCATGGTATGGCTGAGATGCATGACAGACACAGAGATATGCGCCTGGATGTTGATAATATGTCTTATGAGGAGTTATTGGCACTGGAGGAGCGTATAGGAGATGTGAGCACTGGGTTGAGTGAGGATACTATTATGAAGGCAATGAAACAGAGGAAATATGGCTCTCTGTCGACATTGACCTTGTCAGATGTAGAACCTTGCTGTATCTGTCGGGAGGAGTATGCTGATGGCCAAGATATTGGATCATTGGATTGCAGGCATGACTTTCATACTGACTGTATCAAGCAGTGGCTAATGCAAAAGAATCTTTGCCCTATATGTAAGACGACAGCCTTGAGCAGTGGCTAA 2070 0.43 MQGERRTIRSFPEVFDIRQGSTFRTVDIAPQTSLNDILNPADSEFMTSFTGPICDNNLDVQRYRGLDSGESSSRSNLQNQVCDDRAKVEHRWPSTFAPHLDGILLRRDPTQGSSSSHMIHNVNLNVGYFGNGDNYVPGMNAENHFDACKSHGMDMEQASSTFTSLDHLGPSSGNAGYVMDEDGSDSSSLGSLGSSCKRKALEGSSGHSFLGGSSSTLLDTENSVWNNNNFPRSPSVSTPSTNFPVYDPLIFQNPRTGIGMRRMTSDATPSTMVAQTDKSSRNFGRMVAWNDYVPHNLSSSGTSGNSHFGPAHHISRTIPSTDSLELRLTAGATASSGSVQNQSSATNATIFRPSLCNGSNPMVGSSSILVIPDERAVREESNLRISRRNNFERSIFVSTAEMRNSGNDPVAWNVSAGNISNSRRIPSTVQVEPSSNFNPFHAPNVIPHHNGPPHNQQRLSDLTPWSLFPSGSDSGVDSDHFSTFSASSTASSQGSILPGRSIGQSHHQPYPRPSFSMERCNNDFPIATHSLRGFVSDIEGRRRLILEMRHILNAMCRIENLHAEDYIPFDPFIYHGMAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEDTIMKAMKQRKYGSLSTLTLSDVEPCCICREEYADGQDIGSLDCRHDFHTDCIKQWLMQKNLCPICKTTALSSG* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01811 689 Pfam Ring finger domain 641 682 IPR001841 -
Pte3g01811 689 SMART ring_2 641 681 IPR001841 -
Pte3g01811 689 SUPERFAMILY RING/U-box 640 685 - -
Pte3g01811 689 FunFam E3 ubiquitin-protein ligase MBR2 608 686 - -
Pte3g01811 689 MobiDBLite consensus disorder prediction 485 510 - -
Pte3g01811 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 686 IPR013083 -
Pte3g01811 689 ProSiteProfiles Zinc finger RING-type profile. 641 682 IPR001841 -
Pte3g01811 689 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 193 687 IPR045191 GO:0061630
Pte3g01811 689 MobiDBLite consensus disorder prediction 174 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01811 Pte-Chr3 28475686 28480717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01811 1 688 C3H Transcription Factor Family AT2G15530 35.014 2.54e-92 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01811 - - jre:108988909 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01811 3 28475686 28480717 Pte3g01811 3 28475686 28480717 RCT