Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01796 ATGCGGCGTAATGAACTTGCAAATGATATGCTTAAGGCATCAACTTTACAGGAACTTCCTCCAATGTTACGGAGCCCAAGCATGTGCAAAGGCTGTCGCCATCTTAGTTTTTGTACTATCTATCACAAGGTACATGGGGGTACTTCAGAAAGCAGTGGATTAGGAGATTTGTTTGATTCCCATACCAGTCACCTATCATCAACACATTCTATGTTCCTTCAGCACTGGGACCGACTGATAGACTTGGAAGCAAAAGAGAATGAGCTTGTGAAGAAGGAAATCTGGCGTTCGCAAAAATTGAAGAATCAGAATACTAGCAGTGGGATTTCTTCTATCATTCTTGATGCTACAGAAGGGCTTCCACGTCAGAAGTCTCTTAAGGATGACAGATTTACTTATCGATTTGTGCGGAAAGATGTTTCGGCTACATCATTGAAAGGATCGGATCAAGATCTTCATCTTCATTATTCGCCCGAAAGTGGTTTAGATCTCACCTTAAGAAGTGGAGATTATGTGATACTAAGCACGGAGACAAATAATCAAGTCGTTGCAAGTGGGGTGATAAGGGATATTAGTCATGTCCACATTTCTATTTCCTTCTCGAAGCGATTACGACTTCCTGGGAGCTCTTCCTTGACTGAAGATCTCCTCCAACAAGTTTGGAGAGTAGACAAGGATCAGTTTATGACTTCATTTGCAGTAATGAGGTTTAACATTGTCCAGCTTTTTCTGCCGGACAAACAAAATACTCATTTGAGGAGGATGATAGTTGACCTGCAGGCTCCAAGATTTGATAGTGGAAGTATTATCAGCCAGAATCCAGCAATTTCCTACGTATGGTCAGTCAAAAGTTTAAATGAGGATCAGCGAAAAGCAATTCTGAAGATACTTGCAGCGAAAGATTATGCTCTTATTCTGGGAATGCCTGGGACTGGAAAGACATTTACCATGGTGCATGCGGTAAAGGCATTATTGTTGAGAGGCACATCGATTCTGTTAACTTCGTACACTAACTCAGCAGTTGATAATTTACTCCTTAAATTAAAGTCCCAGGGCATTGATTTTGTACGGATTGGTAGACGTGAAGTGGTGCATGAGCAAGTACGAGGACATTGCCTAACAGACATAAAAAAAGTTGAAGACATCAAAATAAGATTGCAACAAGTCAAGGTTGTTGCAGTAACTTGTCTGGGTGTTACAAGTCCCTTACTTGCAAACATGAGATTTGATGTATGCATAATGGATGAAGCTGGACAGACAACACTTCCAGTTTCACTGGGGCCTTTGACATTTGCTTCAACATTCGTACTTGTGGGTGACCACTATCAGCTACCTCCGCTTGTCCAGAGTGCAGAAGCTCGAGAGAATGCCATGGGGATAAGTTTGTTTCGTAGGCTATCTGAAGCACATCCCCATGCAATTTCAGCACTCCAGAGTCAGTATCGTATGTGTCAGGGTATAATGGAACTATCAAATGCGTTGATATATGGCAACAGGTTGCGTTGCGGCTCCTCTGAGGTGGCTAGTGGCAAGCTCGAGTTTTCTAGCTCAAAATGGAATTCATCTTGGTTAGAAGAGGTTCTGGATCCAACAAGATCAGTGATATTTGTTGATACTGATAAATTGCCCGCTTTAGAAGTGAAAGACCAGAAAGCTGTCAATAATCCAGTTGAAGCTGGCATAGTAGCACAGGTTGCCAAGGCATTAATTGACAATGGAATAAATGGAGATAATATTGGCATTATTACTCCTTATAATTCTCAGGCGAGTCTTATTGGTCATGCTATATGCTTTGAATCTTTGGAGATACATACGATCGACAAATTCCAGGGACGAGATAAGGATTGTATACTACTTTCTTTCGTTAGATCCAGTGACAATCCTAGGAACTGCACATCTTCACTGCTTGGAGACTGGCACAGGATAAATGTTGCTCTGACACGTGCAAAGAAAAAGTTGATCATGGTGGGATCTTGCAGAACAATATCAAGTGTTCCACTTCTGCGGCTTCTTATTAGGAAGGTTGAGGAGCAATCTGGAATTTTGAGTGTGCGCGTGACGGATATCTGCAGAAATGTGCATTTTGGAAGATGCTCTCAGTTGGGATAA 2109 0.4182 MRRNELANDMLKASTLQELPPMLRSPSMCKGCRHLSFCTIYHKVHGGTSESSGLGDLFDSHTSHLSSTHSMFLQHWDRLIDLEAKENELVKKEIWRSQKLKNQNTSSGISSIILDATEGLPRQKSLKDDRFTYRFVRKDVSATSLKGSDQDLHLHYSPESGLDLTLRSGDYVILSTETNNQVVASGVIRDISHVHISISFSKRLRLPGSSSLTEDLLQQVWRVDKDQFMTSFAVMRFNIVQLFLPDKQNTHLRRMIVDLQAPRFDSGSIISQNPAISYVWSVKSLNEDQRKAILKILAAKDYALILGMPGTGKTFTMVHAVKALLLRGTSILLTSYTNSAVDNLLLKLKSQGIDFVRIGRREVVHEQVRGHCLTDIKKVEDIKIRLQQVKVVAVTCLGVTSPLLANMRFDVCIMDEAGQTTLPVSLGPLTFASTFVLVGDHYQLPPLVQSAEARENAMGISLFRRLSEAHPHAISALQSQYRMCQGIMELSNALIYGNRLRCGSSEVASGKLEFSSSKWNSSWLEEVLDPTRSVIFVDTDKLPALEVKDQKAVNNPVEAGIVAQVAKALIDNGINGDNIGIITPYNSQASLIGHAICFESLEIHTIDKFQGRDKDCILLSFVRSSDNPRNCTSSLLGDWHRINVALTRAKKKLIMVGSCRTISSVPLLRLLIRKVEEQSGILSVRVTDICRNVHFGRCSQLG* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01796 702 Pfam AAA domain 385 450 IPR041677 GO:0004386
Pte3g01796 702 Pfam AAA domain 285 377 IPR041677 GO:0004386
Pte3g01796 702 FunFam DNA replication helicase 481 693 - -
Pte3g01796 702 CDD SF1_C_Upf1 483 676 IPR047187 -
Pte3g01796 702 Pfam AAA domain 460 659 IPR041679 -
Pte3g01796 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 664 IPR027417 -
Pte3g01796 702 Gene3D - 213 480 IPR027417 -
Pte3g01796 702 PANTHER DNA2/NAM7 HELICASE FAMILY 135 677 IPR045055 -
Pte3g01796 702 CDD DEXXQc_DNA2 284 482 IPR026851 GO:0017116
Pte3g01796 702 Gene3D - 481 694 IPR027417 -
Pte3g01796 702 FunFam DNA replication helicase Dna2 219 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01796 Pte-Chr3 26570999 26582881 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01796 1 424 Core DNA Replication Machinery Family AT1G08840 61.860 9.13e-178 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01796 K10742 - qsa:O6P43_017137 1007.28