Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01772 ATGGAACAGCAACCTATAGAAAAGCCAAAAGGAAGAGAAGAGGTCCTTCTATCTCATTCTCACAAAGCCCAACCGAGGACTCCTAGTAGTAAAAAGCCCCATGAGACCAGAGGCGATGCGTGCAGCAACCGCAAAAGTACTAAGTTTGTTGGAGTGAGACAGAGGCCTTCTGGGAAATGGGTGGCAGAGATCAAAGATACAACACAGAAGATTAGAATGTGGCTTGGTACATTCGAAACGGCTGAAGAAGCTGCTCGAGCTTATGATGAAGCTGCTTTATTACTTAGAGGGTCTAATACAAGAACCAACTTTGCCGATACAGATCAATATCGTGCGGCCAACTCTCTTATATCAACCAAAATCAGAAATCTCTTCAATCACAAAATATGCTTGAAAAGAAACTCCCCGAGATCAAATTCCTCGAGCCTTGGTAATGGTAATATTATCAGCATTACAACCGCTCCAGCTTTTAAAGTCCATGAATCTAACTCCAGTTCCTCTATCAGTACAACTACTAGTACCGTCATCGACAAGAGCTTAGAGAGTACTACTGACCAAGATACATCACTCTTCAAAAAGGAAGAGCACAGTAATAATGTGAAGAGCACTTGCAGTGATGAAGGGTACAGACCAGATTTGAGTAGCTGCATTGTGGAACTAGAACGTGCAACGACATTGGGTGTATCTCACCGTTTCAGTGGTTCTTCGTGGCCTTTCACAACAGGATTGGAGGAACAAGTCCCTGCAATTGCAACATCAATCCAACAAGGCTTGCTGCCCTGGGATGATTTCAAAGCAGGTGACAAAACAGAATTTGAGCCAATGACACCAATATCAGCATCGATGTATGAAGTGAATGGTTTTCTGGGAAATGGATGTGATACTGGAAATTATGTTGATGCTTTATGGGATTTTTCTAAGCTTTACTGTCCCCCTTGTACGTTCTTTCTCAACTAG 957 0.4274 MEQQPIEKPKGREEVLLSHSHKAQPRTPSSKKPHETRGDACSNRKSTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAALLLRGSNTRTNFADTDQYRAANSLISTKIRNLFNHKICLKRNSPRSNSSSLGNGNIISITTAPAFKVHESNSSSSISTTTSTVIDKSLESTTDQDTSLFKKEEHSNNVKSTCSDEGYRPDLSSCIVELERATTLGVSHRFSGSSWPFTTGLEEQVPAIATSIQQGLLPWDDFKAGDKTEFEPMTPISASMYEVNGFLGNGCDTGNYVDALWDFSKLYCPPCTFFLN* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01772 318 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Pte3g01772 318 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Pte3g01772 318 FunFam ethylene-responsive transcription factor RAP2-11 47 106 - -
Pte3g01772 318 CDD AP2 47 107 IPR001471 GO:0003700|GO:0006355
Pte3g01772 318 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 168 - -
Pte3g01772 318 MobiDBLite consensus disorder prediction 1 20 - -
Pte3g01772 318 Pfam AP2 domain 47 97 IPR001471 GO:0003700|GO:0006355
Pte3g01772 318 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Pte3g01772 318 SUPERFAMILY DNA-binding domain 48 106 IPR016177 GO:0003677
Pte3g01772 318 MobiDBLite consensus disorder prediction 1 45 - -
Pte3g01772 318 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Pte3g01772 318 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Pte3g01772 318 MobiDBLite consensus disorder prediction 28 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01772 Pte-Chr3 24415740 24416696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01772 27 126 AP2-EREBP Transcription Factor Family AT5G19790 70.000 4.72e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pte3g01772 AP2 5.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01772 K09286 - tcc:18589574 167.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01772 3 24415740 24416696 Pte3g01772 3 24415740 24416696 RCT