Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01754 ATGTATGAACACCAACAAGAAGGTTTTGAGTTTATATGGAAGAACTTGGCAGGAAGCATTCATCTTGATAAGGTGAACATCGATGATACAAATCACAAGGGTGGTTGCATCATTTCTCATGCCCCTGGAACCGGAAAGACACGGTTGACCATAGTGTTTCTTCAGTCATATTTGCAGTTATTCCCGAAATGTGGTCCTTTGATCATTGCTCCTGCTAGCATACTTCACACTTGGGAAATTGAGTTTCAGAAATGGGCTGTAGGGATTAAGTTCTACAACTTGAGCAATGCAGAATTGTCTGAGGAAGAGAATGAAATTGACTCTCTAGATGGTTATAGCTTCGACAAACGAAATAAGAGGGTTGTACGGATGGTAAAGTTGCATCTATGGATGCAGAAGAGGAGTGTACTTGGAATTAGCTACAACTTGTATGAGAAGCTTGCTGGAGAGAAGGTTGAAGATAACAAGAAAGCAAACAAAACAAAGAAACTGCCAAAGGCTGATAAAGAAAGCAAAGAAATAAGGAACCTTCTGCAGACTTTCCCTGGCTTGTTGGTTCTTGATGAAGGGCATACTCCCCGTAATCAACGCAGTCAAATTTGGAAGGTTCTATGGGAAATACGAACAAAGAAACGCATAATACTCTCTGGTACTCCTTTTCAGAATAACTTCTTGGAATTTTATAATACATTATGTTTAGCTAGACCGTCATTCCCTAAGGAAATTCCTGAAAGTCTTAGAAGATTCTGCCAGAGGAAAATGATGCAAGATATTGATGATACAAGCGTGAAACCATCTTACACCGGCCACTGTTTCAAAAATCAAGCAGATAGAGAAATATCGAAGTTACGATCTCTGATGGATCCCTTTGTTCATGTTCACAAAGGAGATATTCTGCAGAAAAATCTTCCTGGTTTGAGAGATTTTGTGGTGATGTTGAATCCTGATAATTTGCAGAAGACCCTTTTAGGCAAAATAGGACGTTCTCAGAATGTGTTGGATTTTGAATACAAGTCAACTTTGGTATCTATCCATCCATCTCTCTTGCTGCAATGCTCTCTGTCCAGAGAAGAAGAAGCTGCAATCGACATGAGAGCACTCCAAGCCTTAAGATTGGAGCCAATTGGGGGTGCCAAAACAAGATTTGTTATCGAATTTGTCCAGCTCTGTAGCACTCTAAATGAAAGAGTACTTGTGTTCAGTCAATTCATTCATCCATTGCGTATATTAATTGATCAACTCAACAAAGTGTTGAAATGGTCAGAAGGGGACGAAATATCATGTATTCTTGGTACACTTGACCAAAAGAAAAGGCAGTCAGTGATGAAGCGCTTCAATGATCCCGACAGCGAAGCAAAAATTTTATTTGTATCCACAAAAGCATGTTGTGAGGGCATCAACTTAGTTGGTGCTTCAAGAGTTGTACTGCTTGACATTGTTTGGAACCCTTCTGTTGAAAGACAAGCTATCAGCCGTGCCTATAGGCTTGGCCAGACGAGAATTGTCCATACTTACCATCTGCTTACAACAGGAAGCTCAGAATGTGAGAAGTATTGTAAACAGTCGCAGAAGGACCGCTTATCTGAGCTTGTGTTTTCGTCTAAGGTTAGTGAAAATGACAACCAAGATGATTATAGAACAGTTTCAGATGATAGAGTCTTAGAGGAGATGGTTCAGCATGATAGGTTAAAAGATATGTTTAACAGAATAATTTTCAAACCCAAGACACATTAG 1734 0.3968 MYEHQQEGFEFIWKNLAGSIHLDKVNIDDTNHKGGCIISHAPGTGKTRLTIVFLQSYLQLFPKCGPLIIAPASILHTWEIEFQKWAVGIKFYNLSNAELSEEENEIDSLDGYSFDKRNKRVVRMVKLHLWMQKRSVLGISYNLYEKLAGEKVEDNKKANKTKKLPKADKESKEIRNLLQTFPGLLVLDEGHTPRNQRSQIWKVLWEIRTKKRIILSGTPFQNNFLEFYNTLCLARPSFPKEIPESLRRFCQRKMMQDIDDTSVKPSYTGHCFKNQADREISKLRSLMDPFVHVHKGDILQKNLPGLRDFVVMLNPDNLQKTLLGKIGRSQNVLDFEYKSTLVSIHPSLLLQCSLSREEEAAIDMRALQALRLEPIGGAKTRFVIEFVQLCSTLNERVLVFSQFIHPLRILIDQLNKVLKWSEGDEISCILGTLDQKKRQSVMKRFNDPDSEAKILFVSTKACCEGINLVGASRVVLLDIVWNPSVERQAISRAYRLGQTRIVHTYHLLTTGSSECEKYCKQSQKDRLSELVFSSKVSENDNQDDYRTVSDDRVLEEMVQHDRLKDMFNRIIFKPKTH* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01754 577 CDD SF2_C_SNF 378 508 - -
Pte3g01754 577 SMART ultradead3 1 245 IPR014001 -
Pte3g01754 577 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 576 IPR044567 GO:0080188
Pte3g01754 577 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 385 542 IPR001650 -
Pte3g01754 577 Pfam SNF2-related domain 22 322 IPR000330 GO:0005524|GO:0140658
Pte3g01754 577 Pfam Helicase conserved C-terminal domain 391 497 IPR001650 -
Pte3g01754 577 Gene3D - 304 571 IPR027417 -
Pte3g01754 577 SMART helicmild6 412 497 IPR001650 -
Pte3g01754 577 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 268 IPR027417 -
Pte3g01754 577 Gene3D - 1 270 IPR038718 -
Pte3g01754 577 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 537 IPR027417 -
Pte3g01754 577 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 27 237 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01754 Pte-Chr3 19699232 19700965 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01754 431 527 RAD5 or RAD16-like Gene Family AT5G22750 39.175 5.10e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte3g01754 SNF2_N 1e-25 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01754 K10875 - qsu:112002935 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01754 3 19699232 19700965 Pte3g01754 3 19699232 19700965 RCT