Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01751 ATGAGTCGTAGAGTCAGGAGGAAATTGTGTAAGAGAGGGAAAGATAAGGTGGTTTTGCCTTGTTACCCTGAAGTTCAAGATGAGGATTTGGATGTGGGTAGGAAAGATGTCGTTGATTGGACTCAGTTGCCTGATGATACAGTAATTCAGCTGTTTTCTTGTCTGAATTATCGTGATCGGGCAAGCTTGGCATCAACTTGTAGGACATGGAGTCTTCTTGGTTGTGCTCCATGTTTATGGACTTCTCTTGATCTTCGTGCTCATCGGTGTGATCCAGCAACGGCAGCTTCACTTGCTCCCAAATGTGCTAATCTTCAGAAGCTTAGATTTCGTGGGGTTGAGTCTGCTGATGCAATTATACACCTCCAAGCAAGAAAGTTGCGTGATATAAGTGGTGAGTACTGCAGGAAAATTTGTGATGCATCTCTTTCAATGATTGTTGCTCGACATGAGGCACTTGAGAGTATTCAGCTTGGGCCTGATTTTTGTGAGAGAATCAGCAGTGATGCTATAAAAGCAATAGCTCATTGTTGCCCAAGATTGCGGAGACTTCGTCTCTCAGGAATCAGGGATGTTAACGCTGATGCTATTAATTCTCTAGCTAAACATTGTCCTAGGTTGACTGATATTGGGTTTATAGATTGTTTAAATGTTGATGAGGTGGCATTGGGCAATATGGCGTCAGTTCATTTTATATCTGTTGCTGGGACTTCAGATATGAAATGGGGTGTCATTTCTCAGTCATGGCAAAAGCTGCCATTTTTGATAGGGTTGGATGTGTCAAGAACAGATATTAGTGCAACTGCTGTCTCAAGAATTCTGTCATCCAGTAGCTTGAAGATTTTTTGTGCTCTGAATTGTGCTGCCCTTGAAGAAAATACAAACTTTTCTGCTAGTAAATATAAAAACAAGTTAGTACTAACTATTTCTACTGACATATTCAAAGGAATAGCTTCTCAATTTTTTGGCAATATGAAAAACGGGAAGAATGTGTTTTTGGAATGGAGAAACATGAAAAAAAAGTATAAGGATTTCGACAAGATGATGTCTTGGCTTGAATGGATCTTATCTCATACGCTTTTACGTTCTGCTGAGAGCACACTACAAGGTCTGGAGAGTTTCTGGATCAAACAAGGGGGATCTCTCTTGCTTAGTTTAGTGCAGAGCTCAGAAGAGGATGTTCAAGAAAGGGCAGCTACAGGACTTGCAACGTTTGTTGTTATTGATGATGAGAATGCTAGCATAGACTGTAATAGAGCTGAGTCGGTTATGCGAGATGGTGGTATACGCCTGCTGTTAGAATTGGCAAAGTCTTGGCGGGAGGGACTCCAGTCAGAGGCTGCTAAGGCCATAGCAAATTTGTCCGTTAATGCAAATGTTGCCAAAGCTGTTGCGGATGAGGGAGGAATCACTATTCTTGCTGGGTTAGCTAGGTCCACGAACAAGCTGGTAGCTGAAGAGGCTGCTGGAGGACTTTGGAATCTTTCTGTTGGAGAAGAACACAAGAGTGCCATTGCTGATGCTGGTGGTGTAAAAGCTTTAGTTGATCTTATTTTCAAATGGTCCTCTGGAGGTGAAGGAGTTATGGAACGTGCAGCTGGTGCATTGGCTAATTTGGCAGCAGATGACAAGTGTAGCACAGTTGTTGCATTGGCTGGTGGTGTACATGCCTTAGTGATGCTTGCCCGTAATTGTGAATTTGATGGAGTTCAAGAGCAGGCTGCCCGTGCATTAGCTAATTTGGCTGCTCATGGAGATAGCAACAGCAACAATGCTGCAGTAGGGCAAGAGGCTGGTGCTCTTGAAGCACTTGTTCATCTTACTCGTTCTCGATATGAGGGGGTCAGACAAGAAGCTGCTGGAGCGTTGTGGAATTTGTCATTTGATGACAGGAATCGAGAAGCAATTGCTGCAGCTGGTGGAGTTGAGGCCTTGGTAACTCTAGCACAGTCATGCTCTAATGCATCCGCTGGACTTCAAGAGAGGGCTGCAGGTGCTCTGTGGGGTTTATCAGTTTCAGAGGCCAATAGCATTGCTATTGGACGAGAAGGAGGTGTTGTGCCTTTGATTGCTCTGGCACGTTCAGATTCTGAGGATGTTCACGAAACTGCTGCAGGAGCACTCTGGAACCTTGCTTTCAACCCTGTGAATGCCCTTAGGATAGTGGAGGAAGGGGGAGTTCGGGCATTGGTTCATTTATGTTCTTCATCAGTATCAAAAATGGCACGTTTTATGGCCGCCTTGGCGTTGGCTTACATGTTTGATGGGAGAATGGATGAAATTGCATTACTAGGCAGCTCATCGGAAAATAATTCCAAAAGTGTTAGCTTGGATGGAGCTAGAAGACTGGCCTTGAACCACATTGAGGCATTTGTTCGCAAGTTCTCGAATCCTCAAGCATTTTCTGTTGCTGCTGCATCATCAGCTCCTGCTGCATTAGCACAAGTAACTGAGGGTGCTCGTATCCAGGAAGCTGGACATCTCAGATGCAGTGGGGATGAAATTGGAAGATTTGTTACCATGCTACGAAACCCATCTACAACACTCAAGGCTTGTGCTGCATTTGCTCTTCTTCAGTTTAGCATTCCTGGAGGAAGGCATGCTGTACACCACGCGGGCCTCATGCAGAATGCAGGAGCATCAAGGGTTCTTCGTGCAGCAGCCGCAGCTGCGTCTGCCCCACTTGAGGCCAAGATCTTTGCCAGAATCGTTCTTCGCAATCTGGAGCATCACCATACTGATCTAACAGTTTCATTTATATTGTGA 2766 0.4472 MSRRVRRKLCKRGKDKVVLPCYPEVQDEDLDVGRKDVVDWTQLPDDTVIQLFSCLNYRDRASLASTCRTWSLLGCAPCLWTSLDLRAHRCDPATAASLAPKCANLQKLRFRGVESADAIIHLQARKLRDISGEYCRKICDASLSMIVARHEALESIQLGPDFCERISSDAIKAIAHCCPRLRRLRLSGIRDVNADAINSLAKHCPRLTDIGFIDCLNVDEVALGNMASVHFISVAGTSDMKWGVISQSWQKLPFLIGLDVSRTDISATAVSRILSSSSLKIFCALNCAALEENTNFSASKYKNKLVLTISTDIFKGIASQFFGNMKNGKNVFLEWRNMKKKYKDFDKMMSWLEWILSHTLLRSAESTLQGLESFWIKQGGSLLLSLVQSSEEDVQERAATGLATFVVIDDENASIDCNRAESVMRDGGIRLLLELAKSWREGLQSEAAKAIANLSVNANVAKAVADEGGITILAGLARSTNKLVAEEAAGGLWNLSVGEEHKSAIADAGGVKALVDLIFKWSSGGEGVMERAAGALANLAADDKCSTVVALAGGVHALVMLARNCEFDGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVHLTRSRYEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVTLAQSCSNASAGLQERAAGALWGLSVSEANSIAIGREGGVVPLIALARSDSEDVHETAAGALWNLAFNPVNALRIVEEGGVRALVHLCSSSVSKMARFMAALALAYMFDGRMDEIALLGSSSENNSKSVSLDGARRLALNHIEAFVRKFSNPQAFSVAAASSAPAALAQVTEGARIQEAGHLRCSGDEIGRFVTMLRNPSTTLKACAAFALLQFSIPGGRHAVHHAGLMQNAGASRVLRAAAAAASAPLEAKIFARIVLRNLEHHHTDLTVSFIL* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01751 921 SMART arm_5 714 755 IPR000225 GO:0005515
Pte3g01751 921 SMART arm_5 673 713 IPR000225 GO:0005515
Pte3g01751 921 SMART arm_5 629 672 IPR000225 GO:0005515
Pte3g01751 921 SMART arm_5 457 497 IPR000225 GO:0005515
Pte3g01751 921 SMART arm_5 498 541 IPR000225 GO:0005515
Pte3g01751 921 SMART arm_5 588 628 IPR000225 GO:0005515
Pte3g01751 921 SMART arm_5 417 456 IPR000225 GO:0005515
Pte3g01751 921 SMART arm_5 542 583 IPR000225 GO:0005515
Pte3g01751 921 SUPERFAMILY F-box domain 34 93 IPR036047 GO:0005515
Pte3g01751 921 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 599 641 IPR000225 GO:0005515
Pte3g01751 921 Gene3D - 524 587 IPR011989 -
Pte3g01751 921 PANTHER PROTEIN ARABIDILLO 1 1 914 - -
Pte3g01751 921 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 684 726 IPR000225 GO:0005515
Pte3g01751 921 Pfam Armadillo/beta-catenin-like repeat 675 712 IPR000225 GO:0005515
Pte3g01751 921 Pfam Armadillo/beta-catenin-like repeat 499 541 IPR000225 GO:0005515
Pte3g01751 921 Pfam Armadillo/beta-catenin-like repeat 423 455 IPR000225 GO:0005515
Pte3g01751 921 Pfam Armadillo/beta-catenin-like repeat 591 627 IPR000225 GO:0005515
Pte3g01751 921 Pfam Armadillo/beta-catenin-like repeat 629 671 IPR000225 GO:0005515
Pte3g01751 921 Pfam Armadillo/beta-catenin-like repeat 552 583 IPR000225 GO:0005515
Pte3g01751 921 Gene3D - 588 677 IPR011989 -
Pte3g01751 921 Gene3D - 678 796 IPR011989 -
Pte3g01751 921 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 509 554 IPR000225 GO:0005515
Pte3g01751 921 SUPERFAMILY ARM repeat 383 582 IPR016024 -
Pte3g01751 921 Gene3D Ribonuclease Inhibitor 34 336 IPR032675 -
Pte3g01751 921 Gene3D - 381 523 IPR011989 -
Pte3g01751 921 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 469 IPR000225 GO:0005515
Pte3g01751 921 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 510 IPR000225 GO:0005515
Pte3g01751 921 SUPERFAMILY RNI-like 81 292 - -
Pte3g01751 921 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 640 685 IPR000225 GO:0005515
Pte3g01751 921 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 553 584 IPR000225 GO:0005515
Pte3g01751 921 SUPERFAMILY ARM repeat 525 754 IPR016024 -
Pte3g01751 921 SMART fbox_2 43 83 IPR001810 GO:0005515
Pte3g01751 921 FunFam Protein ARABIDILLO 2 354 501 - -
Pte3g01751 921 Pfam F-box-like 40 86 IPR001810 GO:0005515
Pte3g01751 921 CDD F-box_AtADLO1-like 39 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01751 Pte-Chr3 19025189 19044990 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01751 555 757 U-box Gene Family AT2G23140 35.784 1.19e-20 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01751 - - qsa:O6P43_017291 1434.85