Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01733 ATGGGTCGTGTGAAACTGGAGATCAAGAGAATAGAAAACACCACAAATCGACAAGTTACATTTTCTAAACGCAGAAATGGTCTCATTAAGAAAGCATATGAGTTGTCTATCCTTTGCGACATCGATATTGCTCTTATTATGTTCTCCCCATCTGGACGTCTCAGTCATTTTTCTGGAAGAAGAAGGATCGAGGATGTTTTCAGTCGTTTTGTTAATCTCCCCGATAACGAAAGAGATGGTAAGATCATTTTGAGACAACTCAAATTAATCACAGCATTGTGCAATTTGCAGTACCTACTAAGGACTCTTCAGCAACTAAGGAGTGAAAACGATATAGCTCTTCACCTCGCCAAGTCCGTTCCATATAAACTTGTTTTTGTTTTACAGGAACTGCAACAGGAAGTTAGTAGGTTACAGCAACAAGTACACATCGCAGAGGAACAGATAAGGGTGTTTGAACCAGACCCATTGAAGCTGACATCTGTGGCGGAACTTGAATCCAGCGAAAAGCATCTCGTAGATACCTTGACTCGTGTCATGCAGAGAAAGGAATATCTGCTGAGCAATCACTTGTCATCTTATGATCCTTCAGGCATGCAGCAGGGAATACCTTCCTCATTCGAGAGTCAAGTTGTGGGCTGGTTGCCCGACGGTGGACAGAATCATCAGCAAATGTTTGATGCATCTGCACCTTTGAATCAGCTCAGGGATTTATCATCCACCGTGTATTATCAATTTTCACAAGGGACGAGCTCAGTTAACGCAGACCCACGAAGCCTAGGAGAGTGCAGTGTGACGAATCCATCGGATGGGAATCTTCCAGCCTGGTCTCAAAGCTTCCAATCGACCGCTCACCCTTCCACGCTCATGCCAACTACTTCAACCCCTCATCCTTCTACACTCCTTTCTCCTACCTTGTATTCTCATCCCATCCAGCATGATAGGGTGGGATCAGAGATGCCATCGACGATGCCACATCAACAGGTGGACATCCCAATCCACGGCGGTGGAAATGTGCAACAAAATAATAACGATGTTTCAACCTCGGATTATGAATGCAAAGTTCCTCAGCTCAATGGGCAATGA 1086 0.4457 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGRRRIEDVFSRFVNLPDNERDGKIILRQLKLITALCNLQYLLRTLQQLRSENDIALHLAKSVPYKLVFVLQELQQEVSRLQQQVHIAEEQIRVFEPDPLKLTSVAELESSEKHLVDTLTRVMQRKEYLLSNHLSSYDPSGMQQGIPSSFESQVVGWLPDGGQNHQQMFDASAPLNQLRDLSSTVYYQFSQGTSSVNADPRSLGECSVTNPSDGNLPAWSQSFQSTAHPSTLMPTTSTPHPSTLLSPTLYSHPIQHDRVGSEMPSTMPHQQVDIPIHGGGNVQQNNNDVSTSDYECKVPQLNGQ* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01733 361 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte3g01733 361 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte3g01733 361 Gene3D - 13 89 IPR036879 GO:0003677|GO:0046983
Pte3g01733 361 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Pte3g01733 361 MobiDBLite consensus disorder prediction 338 361 - -
Pte3g01733 361 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Pte3g01733 361 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte3g01733 361 Coils Coil 128 148 - -
Pte3g01733 361 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte3g01733 361 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 230 - -
Pte3g01733 361 FunFam MADS-box transcription factor 41 13 91 - -
Pte3g01733 361 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte3g01733 361 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte3g01733 361 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01733 Pte-Chr3 17207495 17210212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01733 1 362 Type I MADS-box Gene Family AT1G22130 52.066 1.36e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte3g01733 SRF-TF 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01733 - - gmx:100305913 421.779