Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01727 ATGGCGGCTGCAATGGATATCTTCAGTAGTACACCAGTTCAGTCAGATCCTATGAGAGGTGAGTTGCTGGAAGTACTTGAACCTTTTATGAAAAGTTCTTCCACAGCACCCTATACCTCTCCTTCAGAAACATCATCTCCTTCTTCAACCATCTCTTATTCTTCACCTTCGACGTCCTACTCTCCTCATTCCAACCCCTATTTCTATCCATCACTTCCTTCCCAGTCCAATTTGTACCCAACTGGTTGCTCCGCTTCGACGAACCCGGTTATTTCAGAAGGGTTCTCGAATAGCCGAAACCTTATGGGCTTTGAGCAGCCTGGTTTGGTCATTGGTCTGGACAACCTTACCCCATCTCAGATCATTCAGATCCAAGCTCAGATCCAGCTTCAGAACCAACAAACCTACAACCTTTCCTGGCAGCAACAAAACCAGTATTACCCACAATCACGTAGCCTTAGCTTTCTCAGTCCTAAACCTGTGCCCATGAAGCATTTGGGTGTACCTTCAAAACCAACCAAGCTCTACCGGGGAGTTAGGCAACGGCATTGGGGGAAATGGGTAGCTGAGATCAGACTACCAAAGAATCGTACTCGTCTTTGGCTTGGTACCTTTGACACTGCTGAGGAAGCCGCTCTGGCATATGACAAGGCAGCTTACAAGCTCAGAGGTGACTTTGCAAGGCTTAACTTCCCGAACCTCCGACATCAAGGTTCAACCGTCGGTGGCGAATTCGGAGAGTATAAGCCCCTTCATTCCTCTGTCGATGCTAAGCTTCAAGCTATTTGTGAGAAGTTAGCTGACATGCAGAAACAGGGAAAGTCAGAGAAGCGTGGAAGCTCGTCTAAGAGGTCTAATGCAGGGCGGTCCAAGCTGGTTTCAAAGGCAGTTGTGGAGTCTCAGCCGCAGGTGGTGACTAGTTCTCCGGAGGAGAACTCGGTGGTTACTGAAGTCGAACCAAATGTTTCTTTCAATTGTTACAAGGTGGAGCCTTCCTCGTCGCCGGTGATGGCTGAGAGCGATGGGTCTGAAGGGTCTTCACCTCTGTCAGATCTCACCTTTCCTGATGTAACTGAGTTTCAGTGGGACGGTGCCTCTGACAATTTCGTGTTGGAGAAGTACCCTTCGTATGAGATTGATTGGGCTTCATTGTGA 1155 0.4848 MAAAMDIFSSTPVQSDPMRGELLEVLEPFMKSSSTAPYTSPSETSSPSSTISYSSPSTSYSPHSNPYFYPSLPSQSNLYPTGCSASTNPVISEGFSNSRNLMGFEQPGLVIGLDNLTPSQIIQIQAQIQLQNQQTYNLSWQQQNQYYPQSRSLSFLSPKPVPMKHLGVPSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSTVGGEFGEYKPLHSSVDAKLQAICEKLADMQKQGKSEKRGSSSKRSNAGRSKLVSKAVVESQPQVVTSSPEENSVVTEVEPNVSFNCYKVEPSSSPVMAESDGSEGSSPLSDLTFPDVTEFQWDGASDNFVLEKYPSYEIDWASL* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01727 384 CDD AP2 174 234 IPR001471 GO:0003700|GO:0006355
Pte3g01727 384 Gene3D AP2/ERF domain 175 233 IPR036955 GO:0003700|GO:0006355
Pte3g01727 384 ProSiteProfiles AP2/ERF domain profile. 175 232 IPR001471 GO:0003700|GO:0006355
Pte3g01727 384 SUPERFAMILY DNA-binding domain 175 233 IPR016177 GO:0003677
Pte3g01727 384 SMART rav1_2 175 238 IPR001471 GO:0003700|GO:0006355
Pte3g01727 384 MobiDBLite consensus disorder prediction 33 56 - -
Pte3g01727 384 Pfam AP2 domain 176 224 IPR001471 GO:0003700|GO:0006355
Pte3g01727 384 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 384 - -
Pte3g01727 384 MobiDBLite consensus disorder prediction 269 283 - -
Pte3g01727 384 FunFam Ethylene-responsive transcription factor 2 174 233 - -
Pte3g01727 384 MobiDBLite consensus disorder prediction 269 313 - -
Pte3g01727 384 PRINTS Ethylene responsive element binding protein signature 198 214 IPR001471 GO:0003700|GO:0006355
Pte3g01727 384 PRINTS Ethylene responsive element binding protein signature 176 187 IPR001471 GO:0003700|GO:0006355
Pte3g01727 384 MobiDBLite consensus disorder prediction 332 352 - -
Pte3g01727 384 MobiDBLite consensus disorder prediction 296 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01727 Pte-Chr3 16919763 16922533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01727 1 384 AP2-EREBP Transcription Factor Family AT1G78080 48.232 2.17e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte3g01727 AP2 9.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01727 K09286 - qsa:O6P43_019667 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01727 3 16919763 16922533 Pte3g01727 3 16919763 16922533 RCT