Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01714 ATGTCGCACTTCGGGAGATCTGGCCCTCCGGACATCAGAGACACTTATTCTCTTCTAGTCCTCAACATCTCTTTCAGAACCACCGCTGATGATCTGTATCCTCTTTTCGACAAGTACGGAAAGGTTGTCGATGTCTTCATCCCCAGAGACCGAAGGACGGGGGACTCAAGAGGCTTTGCTTTTGTTCGCTATAAGTATGCTGATGAGGCACAGAAGGCTGTGGATAAGCTTGATGGGAGAGTGGTCGATGGACGAGAAATAACGGTTCAATTTGCAAAATATGGTCCTAATGCTGAGAGAATGTACATATTCGTCCAGCTCATTCAGTTTTACAATTATGTTCTCGATTGA 351 0.4558 MSHFGRSGPPDIRDTYSLLVLNISFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDKLDGRVVDGREITVQFAKYGPNAERMYIFVQLIQFYNYVLD* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01714 116 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 95 - -
Pte3g01714 116 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Pte3g01714 116 SMART rrm2_1 17 90 IPR003954 GO:0003676
Pte3g01714 116 CDD RRM_SRSF2_SRSF8 18 90 - -
Pte3g01714 116 SMART rrm1_1 17 90 IPR000504 GO:0003723
Pte3g01714 116 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Pte3g01714 116 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Pte3g01714 116 Gene3D - 4 101 IPR012677 -
Pte3g01714 116 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 88 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01714 Pte-Chr3 16772759 16773406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01714 14 96 Eukaryotic Initiation Factors Gene Family AT3G11400 38.554 2.09e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01714 K12891 - zju:107420854 200.675