Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01686 ATGACGCCACCCAAAGGGAGGTCTTACTATGCTGCCTACTCCAATGGAAAACAAGTGAAGACGACTAGGTCCTATAATGTGTTACTGATTCATTTGTGGAAAGAAATGGCGCCTCTTCGTTCTCTTTGTTCAATTTCAGCTGCTGCTTATCTCACCACTGAACATCCCAGCACTGGATCCTATTCATTCCAGAATTCGCTCAGTGTTTGTTCTACTCTCTCTGTTTCTAGAACTCCCACTTCGATTTCGGTTCAATCTCAGCCTTGTGGGCAAACCATTTTCAATAGAAACAGAAAAAGTAGTGCTAGTAAGTTCGTTTTAAAGTGTGTTATCTCCACCACTAAAGAACAAACTCTTGATCCTTTACAAGCTGATGTTTCTGCTGAGAGTCCAGTGGTCGAGAGAGAAACTGAGGAATTCTCGCCGGACAGATTGATTGCCCAGAACATACCTTGGACAAGTACTCCTGAGGAAATTCGTAGTTTGTTTGAGAAGCATGGAAGAGTCCTAGACGTTGAGCTGTCTATGCATAACAAGAGCAGAAACAGAGGTCTGGCGTTTGTTACAATGGAATCGCCAGAAGCAGCGCAAGTAGCTCTCAATAATCTCGATTCATCTGAATTTGAAGGTCGCATATTGAAAATTGAATATGCACGTATACGGAAGGAGAAAAGTCGGCCTTCTTTGTCACCAAAAACAGTGACTTACGCCTTGTTTGTTGCAAATCTGGCATTCGAAGCAAGGGCGAAACATCTTAAAGAACTCTTCCAGTCAAAGTATAGTGGGGTTGTTTCTGCATCAGTTATATTTGAAGGCAACCCAAGGAATTCAGCTGGGTATGGATTTGTATCCTTCAGTTCCAAGAAAGAAGCTGAGGACGCTCTTGCTTCATTCCAGGGAAAGGAATTTATGGGAAGACCGATCAGAGTATCACGTAGCAGACCATTTGTCAGATTTCCAGTGGAGGCACAACCTGAAGATAAATCATCTAATTTGGACTCCAATGATTCAGAACTTGGTAGTGCGTGA 1029 0.4286 MTPPKGRSYYAAYSNGKQVKTTRSYNVLLIHLWKEMAPLRSLCSISAAAYLTTEHPSTGSYSFQNSLSVCSTLSVSRTPTSISVQSQPCGQTIFNRNRKSSASKFVLKCVISTTKEQTLDPLQADVSAESPVVERETEEFSPDRLIAQNIPWTSTPEEIRSLFEKHGRVLDVELSMHNKSRNRGLAFVTMESPEAAQVALNNLDSSEFEGRILKIEYARIRKEKSRPSLSPKTVTYALFVANLAFEARAKHLKELFQSKYSGVVSASVIFEGNPRNSAGYGFVSFSSKKEAEDALASFQGKEFMGRPIRVSRSRPFVRFPVEAQPEDKSSNLDSNDSELGSA* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01686 342 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 220 IPR000504 GO:0003723
Pte3g01686 342 CDD RRM_SF 149 216 - -
Pte3g01686 342 SUPERFAMILY RNA-binding domain, RBD 237 320 IPR035979 GO:0003676
Pte3g01686 342 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 236 315 IPR000504 GO:0003723
Pte3g01686 342 PANTHER OS02G0815200 PROTEIN 84 313 - -
Pte3g01686 342 MobiDBLite consensus disorder prediction 327 342 - -
Pte3g01686 342 MobiDBLite consensus disorder prediction 321 342 - -
Pte3g01686 342 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 309 IPR000504 GO:0003723
Pte3g01686 342 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 213 IPR000504 GO:0003723
Pte3g01686 342 SUPERFAMILY RNA-binding domain, RBD 121 227 IPR035979 GO:0003676
Pte3g01686 342 SMART rrm1_1 237 311 IPR000504 GO:0003723
Pte3g01686 342 SMART rrm1_1 144 216 IPR000504 GO:0003723
Pte3g01686 342 Gene3D - 95 224 IPR012677 -
Pte3g01686 342 Gene3D - 225 316 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01686 Pte-Chr3 16307241 16309401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01686 145 332 Eukaryotic Initiation Factors Gene Family AT3G16380 25.253 6.71e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01686 - - qsa:O6P43_019606 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01686 3 16307241 16309401 Pte3g01686 3 16307241 16309401 RCT