Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01685 ATGGCGAGAAGACATAGAAGATTATTTCCAATTTCCACAAACCACACCACGGACTGTCCTGAATTTTGTGATCCAGCTTGTTCTTTCAACTGCTACTCTTATCCATACTACTATTACACCTCTCCACCACCACCACCACCTCCTCTCTCAGCTGTTGATAATCAATCACACCAAAATAACCATGCATCTCTCTACTTGATCATCTTCGCCTCTTTATTTGCAGGTCTGTTTCTAATTGCTGCATATTTCGTGATGAACAAGACCTACAACTCCTTTTGTTGGAATAACCCGGGTCGTTCTCCTTCCCTAGAAGACAACACCAACGAGGAGTTTCTTGATGAGAATCAAGTTGATCATCCAATTTGGTATGTTACCACTGTTGGTTTGCAACAGTCAATTATCAATTCAATCAGTATATGCAGGTACAAGAAAGGTGAGGGTTTGGTTGAAGGTACAGAGTGTTGTGTGTGTTTAGGGGAATTTCATGAGGATGAAATTTTGAGACTGTTACCAAAGTGCAGCCATGCTTTTCACATTAGTTGTATTGACACTTGGTTGAGGTCCCATACTAACTGCCCTCTTTGTCGTGCAACTATAGTATCCAACCATGGCAACGCCGAAACTTATATGTCCGCTCTGCCTTCAGTTAATCAGGAGAGTAATAATTCGAGTGGCAATGAGGAGAGAGAGACAGAATCTGGGAACCACAGTAACCACACAGTGGAGATTGTTACTGGGATCTCAGAAAACAGAGCTGGAAGTGGACATGAAGAAGAACCCCAAGAGACACATGATGAAATGAACTTCAAGGAGCAGGTTCATGGTAATGTGAATCATTTTGTTACGGTATATGATGATTCAACTGACAGTCATCAAACTGAGGATGCGGAAATAGAAGTGATGGAAAACTCAGCTTCAAACGATTCCTCTTCAGCTACCGACGGTCAAGTAATAGGTCTAATGCATTGTTGTTCTTCAGAACCTGACAAAAATAAATTTGTTCACATAGGAGTTGAAGAGGAGTTCTTACATGCTGCGTGTCTTTCAGAACAAGATGACGAGTGTTCAAGTTAA 1074 0.4143 MARRHRRLFPISTNHTTDCPEFCDPACSFNCYSYPYYYYTSPPPPPPPLSAVDNQSHQNNHASLYLIIFASLFAGLFLIAAYFVMNKTYNSFCWNNPGRSPSLEDNTNEEFLDENQVDHPIWYVTTVGLQQSIINSISICRYKKGEGLVEGTECCVCLGEFHEDEILRLLPKCSHAFHISCIDTWLRSHTNCPLCRATIVSNHGNAETYMSALPSVNQESNNSSGNEERETESGNHSNHTVEIVTGISENRAGSGHEEEPQETHDEMNFKEQVHGNVNHFVTVYDDSTDSHQTEDAEIEVMENSASNDSSSATDGQVIGLMHCCSSEPDKNKFVHIGVEEEFLHAACLSEQDDECSS* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01685 357 FunFam RING-H2 finger protein ATL54 129 202 - -
Pte3g01685 357 Pfam Ring finger domain 153 196 IPR001841 -
Pte3g01685 357 MobiDBLite consensus disorder prediction 216 241 - -
Pte3g01685 357 CDD RING-H2_EL5-like 153 196 - -
Pte3g01685 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 206 IPR013083 -
Pte3g01685 357 SMART ring_2 154 195 IPR001841 -
Pte3g01685 357 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Pte3g01685 357 PANTHER RING-H2 FINGER PROTEIN ATL16 45 313 IPR044600 GO:0016567|GO:0016740
Pte3g01685 357 SUPERFAMILY RING/U-box 148 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01685 Pte-Chr3 16279153 16280918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01685 1 200 C3H Transcription Factor Family AT1G72220 49.130 7.91e-61 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01685 - - pop:7461803 281.952