Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01679 ATGGAGTTTGACGAACACGATAACCAACAAGAAGAGGAGGAGGAGGAGGAGGAGCACGACGAAGAAATGGGGATTGCTGTGCCTCCGCTGGGATACGACTCCCTAAACAACTCTGCCACAAGGGTTTCCAAGATGAGTCCAAATCCCGGAGGAGGTGCCGGTATACCAACCAGGAAAGGAAACCGTGTTGTGAAGTACAGAGAATGCCTCAAAAACCATGCCGTCAGCATCGGTGGTCATTCCGTAGACGGTTGCGGTGAGTTCATGGCTGCCGGAGAGGAAGGAACGCTTGACGCCCTCCAATGTGCAGCCTGCAACTGTCACCGAAATTTCCACCGTAAAGAAATCGAAGGTGAAACTAGCCCATTTCAGCAGCAACAGCAACATTATCATCTCCACCAGCAACAATTGCCTCCTTACTACTACCGCACCCCACCACCTGCAAGCGGTGGGTATCTTCAGCACCACTACCATCTACAATACCCGATGGGTACTCATCCTTTTCCGCAGCATCGTCCGCTGGCTCTTCCAGCTGCGGCAACTTCAGGAGGAGGAGGGCAGAGTAGGGAAGAAGCTGACGACATGTCCAACCCGAGTAGCAGTGGTGGTGGTGGTGGAAGTGGAAGCAGGATGAAGAGGTTTAGGACTAAGTTCACGCAGGAACAGAAAGAGAAGATGCTGGCATTTGCCGAGAGACTTGGTTGGAGGATACAGAAGCATGATGATGTAGAAGTGGAACAATTCTGTGCTGAGATCGGTGTGAAGAGACGTGTATTCAAGGTCTGGATGCACAATAACAAGCATAGTCTTGGTAAGAAACCCTAG 825 0.5127 MEFDEHDNQQEEEEEEEEHDEEMGIAVPPLGYDSLNNSATRVSKMSPNPGGGAGIPTRKGNRVVKYRECLKNHAVSIGGHSVDGCGEFMAAGEEGTLDALQCAACNCHRNFHRKEIEGETSPFQQQQQHYHLHQQQLPPYYYRTPPPASGGYLQHHYHLQYPMGTHPFPQHRPLALPAAATSGGGGQSREEADDMSNPSSSGGGGGSGSRMKRFRTKFTQEQKEKMLAFAERLGWRIQKHDDVEVEQFCAEIGVKRRVFKVWMHNNKHSLGKKP* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01679 274 Pfam ZF-HD protein dimerisation region 64 116 IPR006456 -
Pte3g01679 274 MobiDBLite consensus disorder prediction 1 58 - -
Pte3g01679 274 MobiDBLite consensus disorder prediction 192 206 - -
Pte3g01679 274 NCBIfam homeobox domain, ZF-HD class 212 267 IPR006455 -
Pte3g01679 274 MobiDBLite consensus disorder prediction 1 22 - -
Pte3g01679 274 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 66 115 IPR006456 -
Pte3g01679 274 SUPERFAMILY Homeodomain-like 198 272 IPR009057 -
Pte3g01679 274 Gene3D - 196 271 - -
Pte3g01679 274 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 23 269 - -
Pte3g01679 274 MobiDBLite consensus disorder prediction 163 211 - -
Pte3g01679 274 FunFam Zinc-finger homeodomain protein 2 199 272 - -
Pte3g01679 274 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 65 116 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01679 Pte-Chr3 16203583 16205289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01679 15 270 ZF-HD Transcription Factor Family AT4G24660 49.035 2.26e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pte3g01679 ZF-HD_dimer 3.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01679 - - pcin:129294191 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01679 3 16203583 16205289 Pte3g01679 3 16203583 16205289 RCT