Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01662 ATGGGACAAGAACAATCCAAAAGCGAACTGCTGTATCAGCAAGCTAGTCACGGACACTCTGAGGGGATCAAAAGCCTACACAGACAAGGTGCTAGTCTGGAGTGGATAGATAAAGATGGAAAAACTCCTCTGATTCTGGCTTGTATGAACCCTGAGCTTCTAAATGTTGCAAAAACTTTGATAGAACTTGGTGCCAACATCAATGCTTACCGGCCTGGCCGTCATGCTGGTACTCCTTTGCACCATGCAGCCAAAAGGGGCCTTGAAAGTACTGTTAAACTGCTTCTTTCATATAGAGCAAATCCACTGCTTATGAACGATGATTGCCAAACTCCTCTTGAAGTTGCTAGGTCCAAAGGGCATACAAATGTTGTTCGTGCAATTGAGAGCAATATTTGCTTGTTCTCTGGGTGGCTGAGGGAGTTCTACGGACCTGGATTTCTAGAACTACTAGCTCCTCGACTACTATCCAGGAAAGTTTGGGTGGTTGTTTTACCATGTGGCTCTCGCAATCTTTCCCAACCTTATAAGTTGGAGCTTGCTATATATTCCACTTTGCAGGATCCTAAACCACGCACGGTTATTGCACTGTGGAAGGCCAATCTAGAAGAGCAAAACTTAAACCATGCTGATCCTTCAGTGGTTATTGTTGAAAGCTCCTCGAAAACAAGCATTAAACTTGCACCTGAAAAGGAAAATGACAAGCGACAACTTAAATGGTTTGCTGATGCATGCAAAGGAATTGCACAGGCAGTGCCTCCACCATTTCTGCAAAATAACCAAGCTTCACTGCCACCGTCAGCATCTGCTACTGCAGAAGATGAACAATTGGCTATGGCTATAAATGCATCTATTCAGTCAGCCACACAGGAGCTACCATCCCTTGTTAATGCCCACCCGGGCCCTGCAGCAAGTTCTTTTAACAGTTGGCTTGAACCAGGTTCTTCAAGTAATACTGCTAATGGTTGGTTGGAGACTGGTAGATCTGGAGCCACAGTAGGACATGCTCGTGTAAATACAAGTGGTGCTTCCACCGGTGACTTTAGCTCAGATGGTGGTAGAAGCAAGCATATGCATGTCCACAACAACAACATTGCTGCTATAATAACTGACAGTGCAAACACAGTGCCATCAGCTCCACCAGTCCCAGATGAGGTTGTAGAGGGTCCAATTCACTATCCTTCGATAGATTTGAGCGCCATTGATGTTGCATGTACAAGTGTAGAGAAATTACCTAAAGAATCGGAACAAAAGGTTGCTGGCAGTTTCTCATCATGTGTGATATGTTTGGATGCTCCTACTGAAGGAGCCTGCATCCCATGTGGTCATGTTGCTGGATGCATGTCCTGTTTGAAAGAAGTTAAAGCCAAGAACTGGGGTTGCCCAGTTTGCCGTGCCAAGATTGATCAGGTTTTAAAGCTTTATCATGTTTAA 1434 0.4477 MGQEQSKSELLYQQASHGHSEGIKSLHRQGASLEWIDKDGKTPLILACMNPELLNVAKTLIELGANINAYRPGRHAGTPLHHAAKRGLESTVKLLLSYRANPLLMNDDCQTPLEVARSKGHTNVVRAIESNICLFSGWLREFYGPGFLELLAPRLLSRKVWVVVLPCGSRNLSQPYKLELAIYSTLQDPKPRTVIALWKANLEEQNLNHADPSVVIVESSSKTSIKLAPEKENDKRQLKWFADACKGIAQAVPPPFLQNNQASLPPSASATAEDEQLAMAINASIQSATQELPSLVNAHPGPAASSFNSWLEPGSSSNTANGWLETGRSGATVGHARVNTSGASTGDFSSDGGRSKHMHVHNNNIAAIITDSANTVPSAPPVPDEVVEGPIHYPSIDLSAIDVACTSVEKLPKESEQKVAGSFSSCVICLDAPTEGACIPCGHVAGCMSCLKEVKAKNWGCPVCRAKIDQVLKLYHV* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01662 477 Pfam Ankyrin repeats (3 copies) 77 127 IPR002110 GO:0005515
Pte3g01662 477 Pfam Ankyrin repeat 39 69 IPR002110 GO:0005515
Pte3g01662 477 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Pte3g01662 477 Gene3D - 3 142 IPR036770 -
Pte3g01662 477 MobiDBLite consensus disorder prediction 334 354 - -
Pte3g01662 477 SUPERFAMILY Ankyrin repeat 9 132 IPR036770 -
Pte3g01662 477 SMART ring_2 426 464 IPR001841 -
Pte3g01662 477 CDD RING-HC_XBAT35-like 426 475 - -
Pte3g01662 477 MobiDBLite consensus disorder prediction 334 351 - -
Pte3g01662 477 ProSiteProfiles Zinc finger RING-type profile. 426 465 IPR001841 -
Pte3g01662 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 417 476 IPR013083 -
Pte3g01662 477 PANTHER ROLLING PEBBLES, ISOFORM B 418 472 - -
Pte3g01662 477 SUPERFAMILY RING/U-box 425 471 - -
Pte3g01662 477 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Pte3g01662 477 SMART ANK_2a 75 104 IPR002110 GO:0005515
Pte3g01662 477 SMART ANK_2a 108 137 IPR002110 GO:0005515
Pte3g01662 477 SMART ANK_2a 39 69 IPR002110 GO:0005515
Pte3g01662 477 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Pte3g01662 477 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Pte3g01662 477 Pfam Zinc finger, C3HC4 type (RING finger) 425 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01662 Pte-Chr3 15936529 15940964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01662 420 474 C3H Transcription Factor Family AT3G06140 36.364 2.73e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01662 - - qsa:O6P43_003204 625.55