Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01649 ATGGAGATCCTTGAAGAAACGATCCAGGGCGGCGATAAGGTCCGTCCGATTTTCGGGTCGAATGTTGAACCAGAGTCTTGGAAAAAGAAGAACGATTCGTCGGATGGGGCGACTCTGATCCATGACAATCCACTGCCTTTGACAACCAAGCGAAGAATGACCAGCACCGGGCTTCGGATTTCTGCACTGGATAAGTCAGAGGGCGGTACGAAAGATCAGGCCATCGATAGCGGGTTGATGTTGAAAACCAGAGTGAAGGATGAACCCGAAACAGGGGATGGGAATGATGCTGTTTTGAAGGACGAAGTTGATGGTTATGGGTGTTCACAAAAAATGGATTTAGCTCCTGAATCAGTGAGGAAAATGTCGTTCGATGACTTTCTTGAAGCTACGAATACTAAGGTCATGTCTCAGGAAGAATGTCTGAAGACCCAATTCGGAGATCATCCTGCCCCTACAGCAGCATATGTCCCTGTGGTAGACAAAATAGACAATGGCTTGCAGTCCGCCGATAGAGTTAAGGAAGAGCCTGACATCGGCAATGATGTTTTTCATGCAGAAATGAAGGGTTCTAGGTGTGCTCATGAAATGGATACAGTTTCCGTTTCCGAGTTAACGAAGAAAATGTCGTTCGATGAGAAGGTAATGTTTCAGGAAGAATGCTCGAGGACCCAGTTTCCTGTCCAGCCAATGCCCCTTACAGTAGTTACGCCTGCAGCAGTCAAAGCCTACCATCGGCAAGAGTCAAGAATCAGAATTAAGGAAGAACCTGATGTTGGGAATGAGACCCAGATTGACGTTAAGCATGACATCCAAGAACCCAAGTCAGTAAAAGCTGAGCCATTCAATGAGGCAATAGGAATCGATTCAACGGAGATTATGCCTGCGCAAGAACCTATCATTTCTGCGAAAAAGGAGGTAGTTGATTCTGAGTGCATTATAACAGAGGCACCCAAATTAGCAATGGTGCCTTATGCAAGTGAGAGCAAGAAAAATGAAGGTGGTCGTCATAGAAATTCTCCATGGGATATTCCTGCGAGGAAAGTAAAAGTGGAAGACCGAACTGTTAGTTGTGCGGTTGTAGAAGATTGGGATTTCCCAGAAGATCCAGATTGGTATCTGGTGGGAAGAAAAGTGGTATTCGCAACTTCTACAGCCAAAGGAAGAAAGCTACACAACAACGAGATTGTCCATTTTAACTTCCCTGCTACAAGTTCAAGAACCAATTCCCCTCTGATTGTTCGTTTTTCCACCAATCGCTATGGAGAGATCGGTAGGCTTCCGATGGAGTGGGCAAAATGTGTCGTGCCTCTAGTGCGGTCTACAAAGGTTGAAGTTTTAGGCCGATGTATAGATGGAGATAAAAACTTGAAAATAGGCGATACCATCACTTTATATATGAGCTATTACATTCATCACACAATATTCACCGAAGATCGTGATACTTCATGGAACTTTGATGCTCGTGCTAATATAGACTCCACCATTTATCCTTTACTTACACTGTTTGATATGCTGGACATCAAGCCATACCAAAAGGCTGAATTCACTCCCCAGGAACTTGTTTCCAGGAAGCGTGTGCTTGATTTGGAAGGCGACTCAGGTGAAGTGTCGTCAATGTTGCCCATGGTCAAACGAAGAAATGGTTGCGAAAAGCATCCAGAGCAAGCTCAGAATGAACAAGTTGTTTCAGAGTCCACTTTAAACAAACTTGTAGGGGCCGCAGAAGTGTATGATTTGGAGGAGGTGGAACCGCCAAAGACCCTTTTGTGTGATTTAAAGCCATACCAGAAGCAAGCTCTTGGCTGGATGTCGGGACTGGAAGATGGGATTGATGTCGAAAAAGCTGCAAAAACTCTTCATCCTTGCTGGTCAGCTTATCGTATTTGTGACAAAGCATCCTCAATCTATTTAAACAACTTCTCAGGGGAAGCAACGACACAACTTCCATCTGCAATGCAAATGGCAAGGGGAGGAATTTTAGCCGATGCAATGGGACTTGGAAAGACAGTAATGACAATTGCTCTAATACTAGCAAGGCCAGGAAGGGGTAGACAAGATAGTGAGGAAGCTGCTGCTGTGGATGATAGTGAAAGCAGAAAGAGGAAGAGATGTTCGCGCAGCACTACCATCAAAGCAAAGGGTGGCACCCTCGTCGTTTGTCCTATGGCTTTGTTAGGCCAGTGGAAGGATGAACTTGAAACCCATTCTGTTGAAGGAAGTATTTCCATTTTTGTTCATTATGGTGGTGACAGGACTAATGATCCGAAGATAATCTCACAGTATGATGTCGTTTTGACAACTTATGGTGTATTAACTGCAGCCTATAAATATGATGGAGAGAACAGCATTTTCCATAAGGTGAATTGGTATAGGGTGGTGCTTGATGAAGCTCATACTATCAAAGCCTCAAAGACTCAAGGTGCTCAGGCTGCATTTTCTCTATCATCATACTGTCGCTGGTGTCTAACAGGAACTCCTCTTCAGAATAACTTGGAAGATTTGTACAGCTTGCTGTGCTTCCTGCATGTTGAACCATGGTGCAATTGGGCATGGTGGAATAAGTTGATTCAAAAGCCCTATGAGAATGGTGATCCTAGAGGACTGAGAACTGTCAAGGCCATTTTGAGGCCATTGATGTTGAGAAGAACCAAGGAGACAAAAGATAAGGAAGGAAGGCCAATACTTGTTCTTCCACCAACTGATATTCAAATAATTGAGTGCGAACAGTCAGAAGCTGAGCGTGACTTTTATGATGCTCTTTTTAAGAGATCAAAAGTTCAATTTGACCAATTTGTGGCACAAGGCAAAGTTCTTCACAATTATGCTAATATCCTTGAACTGTTGCTTAGGTTAAGGCAGTGCTGTAACCACCCATTTCTTGTCATGAGTCGGGCTGATTCGCAAAAATATGCAGATCTCAACAAGCTATCGAGAAGGTTTCTTGAATCTAGTTCTGATTCTGATTCCACTAAGCAGAAAATTCCATCCCGTGCATACGTTGAAGAGGTAGTGGAGGGTATTAGAAAGGGTGAAAATGCAGAATGCCCCATATGCTTGGAGTCAGCAGACGACCCTGTGCTGACACCGTGTGCACACAGGATGTGCAGGGAATGTCTGCTATCTAGCTGGAGGAGCCCAACAATGGGACACTGCCCTCTCTGTAGGGAATTACTTAAAAAAGCTGATCTCATTACATGTCCTTCAGTGGGATGTTTCAGAATTGATGTTGAGAAAAACTGGAAAGAATCGTCAAAGATTTCTGCACTTTTGAATTGCTTGGAAGAAATTCGGCGTTCAGGCTCCAGTGAGAAGTGTATTGTTTTCAGTCAATGGACCGCATTTTTGGATTTGCTGGAAATCCCCTTGAAAAGAAAAAGAATAGGATTTCTTAGGTTTGATGGGCAATTGGCTCAAAAGCAAAGAGAAAAGGTTCTCAAGGAATTTAATGAGACCCGAGAGAAAATGGTTCTTTTGATGTCTTTGAAAGCTGGCGGTGTTGGTTTAAACTTAACAGCAGCTTCAAATGTTTTCTTAATGGATCCATGGTGGAATCCTGCTGTGGAGGAGCAAGCAATCATGCGAATCCATAGAATTGGACAAAAGAGAGAAGTTGTAGTTCGAAGGTTCATTGTTCTGGACACGGTGGAAGAACGCATGCAACAAGTTCAAGTCAGGAAGCAGCGTATGATAGCTGGAGCTCTCACTGATGAGGAGGTTCGAACAGCCAGGCTTGAAGAACTGAAAATGCTTTTCAGATAA 3762 0.4378 MEILEETIQGGDKVRPIFGSNVEPESWKKKNDSSDGATLIHDNPLPLTTKRRMTSTGLRISALDKSEGGTKDQAIDSGLMLKTRVKDEPETGDGNDAVLKDEVDGYGCSQKMDLAPESVRKMSFDDFLEATNTKVMSQEECLKTQFGDHPAPTAAYVPVVDKIDNGLQSADRVKEEPDIGNDVFHAEMKGSRCAHEMDTVSVSELTKKMSFDEKVMFQEECSRTQFPVQPMPLTVVTPAAVKAYHRQESRIRIKEEPDVGNETQIDVKHDIQEPKSVKAEPFNEAIGIDSTEIMPAQEPIISAKKEVVDSECIITEAPKLAMVPYASESKKNEGGRHRNSPWDIPARKVKVEDRTVSCAVVEDWDFPEDPDWYLVGRKVVFATSTAKGRKLHNNEIVHFNFPATSSRTNSPLIVRFSTNRYGEIGRLPMEWAKCVVPLVRSTKVEVLGRCIDGDKNLKIGDTITLYMSYYIHHTIFTEDRDTSWNFDARANIDSTIYPLLTLFDMLDIKPYQKAEFTPQELVSRKRVLDLEGDSGEVSSMLPMVKRRNGCEKHPEQAQNEQVVSESTLNKLVGAAEVYDLEEVEPPKTLLCDLKPYQKQALGWMSGLEDGIDVEKAAKTLHPCWSAYRICDKASSIYLNNFSGEATTQLPSAMQMARGGILADAMGLGKTVMTIALILARPGRGRQDSEEAAAVDDSESRKRKRCSRSTTIKAKGGTLVVCPMALLGQWKDELETHSVEGSISIFVHYGGDRTNDPKIISQYDVVLTTYGVLTAAYKYDGENSIFHKVNWYRVVLDEAHTIKASKTQGAQAAFSLSSYCRWCLTGTPLQNNLEDLYSLLCFLHVEPWCNWAWWNKLIQKPYENGDPRGLRTVKAILRPLMLRRTKETKDKEGRPILVLPPTDIQIIECEQSEAERDFYDALFKRSKVQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRADSQKYADLNKLSRRFLESSSDSDSTKQKIPSRAYVEEVVEGIRKGENAECPICLESADDPVLTPCAHRMCRECLLSSWRSPTMGHCPLCRELLKKADLITCPSVGCFRIDVEKNWKESSKISALLNCLEEIRRSGSSEKCIVFSQWTAFLDLLEIPLKRKRIGFLRFDGQLAQKQREKVLKEFNETREKMVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKREVVVRRFIVLDTVEERMQQVQVRKQRMIAGALTDEEVRTARLEELKMLFR* 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01649 1253 SMART HIRAN_2 375 471 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pte3g01649 1253 SMART ring_2 1016 1055 IPR001841 -
Pte3g01649 1253 Pfam HIRAN domain 379 466 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pte3g01649 1253 SUPERFAMILY RING/U-box 1004 1061 - -
Pte3g01649 1253 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 366 1253 - -
Pte3g01649 1253 Pfam Zinc finger, C3HC4 type (RING finger) 1016 1055 IPR018957 GO:0046872
Pte3g01649 1253 Pfam Helicase conserved C-terminal domain 1086 1200 IPR001650 -
Pte3g01649 1253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1009 1064 IPR013083 -
Pte3g01649 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 896 1246 IPR027417 -
Pte3g01649 1253 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1086 1248 IPR001650 -
Pte3g01649 1253 SMART helicmild6 1117 1200 IPR001650 -
Pte3g01649 1253 ProSiteProfiles Zinc finger RING-type profile. 1016 1056 IPR001841 -
Pte3g01649 1253 MobiDBLite consensus disorder prediction 1 52 - -
Pte3g01649 1253 Gene3D - 899 1253 IPR027417 -
Pte3g01649 1253 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 650 845 IPR014001 -
Pte3g01649 1253 FunFam DNA repair protein RAD5B 647 884 - -
Pte3g01649 1253 Pfam SNF2-related domain 596 961 IPR000330 GO:0005524|GO:0140658
Pte3g01649 1253 MobiDBLite consensus disorder prediction 687 704 - -
Pte3g01649 1253 Gene3D - 642 884 IPR038718 -
Pte3g01649 1253 SMART ultradead3 589 862 IPR014001 -
Pte3g01649 1253 CDD DEXDc_SHPRH-like 593 883 - -
Pte3g01649 1253 MobiDBLite consensus disorder prediction 687 708 - -
Pte3g01649 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 578 883 IPR027417 -
Pte3g01649 1253 CDD SF2_C_SNF 1084 1211 - -
Pte3g01649 1253 ProSitePatterns Zinc finger RING-type signature. 1031 1040 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01649 Pte-Chr3 15724072 15730204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01649 159 1254 RAD5 or RAD16-like Gene Family AT5G43530 61.858 0.0 1363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte3g01649 SNF2_N 3e-83 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01649 K15505 - qsa:O6P43_003250 1497.26