Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01639 ATGGATCCTTTAGATAACAACAGCTGTTGGGATTTTCTTGATCACAACTTCATCGAGGAGAACACTATTTCCACAGATTTCCTATGGTCTCATAAAAGTCCAGGCACAGAAATTGATTTTTCTGCTGGTACTATTGCTTGCCCAGGAGGAAAACGCACCCGCAAGAGTAGTCGAAGTGATTCGTTCCCTAGTCCAGGAAGCAAAGCCTGCCGTGAAAGATTGAGAAGGGAAAGAATTAATGACAGGTTTTCTGACTTGTGCTCTGTTTTGGAACCTGGGCGACCTGCAAAAACTGACAAATCTGCTATACTTGATGATGCTATCAGAGTGTTGCACCAACTTAAGGCTGAGGCTTTGGAGCTCAAAGAAGCAAATGAAAAGCTATTGGAAGAAATAAAAGTCTTGAAGGCGGAGAAAAATGAACTCCGTGAAGAGAAACTTGCTTTGAAAGCAGATAAAGAGAGGATTGAAGTGCAGTTGAAATCTATGGTTATGGCACCAGCAGGGATTATGCCACCACATGCAGCTGCATATTCAGCCGGAGTGAACAAGATGGCTGTATATCCAAGTTACGGTTTTGTTCCTATGTGGCATTACATGCCTCCATCTGTCCGTGACACTTCCCAGGATCATGAACTCAGGCCACCAGCAGCATAA 657 0.4384 MDPLDNNSCWDFLDHNFIEENTISTDFLWSHKSPGTEIDFSAGTIACPGGKRTRKSSRSDSFPSPGSKACRERLRRERINDRFSDLCSVLEPGRPAKTDKSAILDDAIRVLHQLKAEALELKEANEKLLEEIKVLKAEKNELREEKLALKADKERIEVQLKSMVMAPAGIMPPHAAAYSAGVNKMAVYPSYGFVPMWHYMPPSVRDTSQDHELRPPAA* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01639 218 Coils Coil 104 159 - -
Pte3g01639 218 Pfam Helix-loop-helix DNA-binding domain 67 114 IPR011598 GO:0046983
Pte3g01639 218 MobiDBLite consensus disorder prediction 49 70 - -
Pte3g01639 218 Gene3D - 67 147 IPR036638 GO:0046983
Pte3g01639 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 138 IPR036638 GO:0046983
Pte3g01639 218 PANTHER BHLH TRANSCRIPTION FACTOR 6 218 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Pte3g01639 218 CDD bHLH_AtILR3_like 68 143 - -
Pte3g01639 218 FunFam Transcription factor bHLH104 66 147 - -
Pte3g01639 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 114 IPR011598 GO:0046983
Pte3g01639 218 SMART finulus 69 120 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01639 Pte-Chr3 15554179 15559347 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01639 53 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 69.048 4.54e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte3g01639 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01639 - - qsa:O6P43_003232 284.263