Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01638 ATGCGTGGCTTGTTACAAGATGGCTCACCAGTTACAACTCCAGGAACCACAGTATCTGCAGGTTCTCATTTGCATGGTCCTGGTACAAGTTTTCCCATTATAGCCATTGCTGTCATTGGAATTCTTGCAACAGCTTTCTTGCTTGTCAGTTACTACATCTTTGTAATCAAATGCTGCCTCAGTTGGCACAGAATCGATTTTCTCCGACGTTTGTCATTTTCAAGAAGGCGTGAAGCGACTTATGTGGTTTACACTTCTGCAACAGAGCCTAGAGGACTTGAAGAGGCTGTTATTCGATTAATCCCAGTCATTCAATTCAAGAAAGAAGAAAACAGAGAAGAAGCAGGGGAAAGAAGCTTTTGTGAATGTGCAGTTTGCTTGAATGAGTTTCAACAAGACGAGAAGCTAAGGATGATACCAAACTGCAGCCATGTCTTCCATATAGATTGCATTGATGTTTGGCTTCAAAACAATGCCAACTGCCCACTGTGTAGAACAAGCATTTCCATGTCTACCCGGTTCAGCAAAAATCACATTCTCACTCCTAATCCTTCTCCTCAAGTTCTAACTCCACACAGTGGTCATCAAACAGTTGGTGATGAAGATTACGTTGTCATTGAATTGGGTATATCCAATGGTTCAGATCAAACATTGCTCGAAGAACATGAAAGGGCAAATTCAAGGGAGGCATCAACGCGCCCTGTAAGTCCATCACGAAGGAAATTAGAACACAGGCTTGTGCAGAAGAAGTCACGGAAGATGTATAAGGTGACAAGCATGGGTGATGAATGTATTGACAGTAGAGGCAAAGATGATCAGTTCTTAGTTCAACCTATTAGGAGATCCATTTCAATGGATTCTTCAATAGATAGACAGCTTTATTTGGCGGTCCAGGAGGCTTTACAACAACAGAACAGGCAAGTCATTGAAGTCAGTCCTGGTCCTAATGAAGGTTGCAGCAGCAGAGTTAGAAGATCTTTTTTCTCTTTTGGGTATGGCTCTAGATCAAGAACCGCAGTACTACCAGATCATCTGGACGCATAG 1044 0.4243 MRGLLQDGSPVTTPGTTVSAGSHLHGPGTSFPIIAIAVIGILATAFLLVSYYIFVIKCCLSWHRIDFLRRLSFSRRREATYVVYTSATEPRGLEEAVIRLIPVIQFKKEENREEAGERSFCECAVCLNEFQQDEKLRMIPNCSHVFHIDCIDVWLQNNANCPLCRTSISMSTRFSKNHILTPNPSPQVLTPHSGHQTVGDEDYVVIELGISNGSDQTLLEEHERANSREASTRPVSPSRRKLEHRLVQKKSRKMYKVTSMGDECIDSRGKDDQFLVQPIRRSISMDSSIDRQLYLAVQEALQQQNRQVIEVSPGPNEGCSSRVRRSFFSFGYGSRSRTAVLPDHLDA* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01638 347 CDD RING-H2_EL5-like 122 165 - -
Pte3g01638 347 PANTHER RING-H2 FINGER PROTEIN ATL16 23 342 IPR044600 GO:0016567|GO:0016740
Pte3g01638 347 Pfam Ring finger domain 122 165 IPR001841 -
Pte3g01638 347 FunFam E3 ubiquitin-protein ligase ATL6 82 171 - -
Pte3g01638 347 SMART ring_2 123 164 IPR001841 -
Pte3g01638 347 SUPERFAMILY RING/U-box 107 174 - -
Pte3g01638 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 171 IPR013083 -
Pte3g01638 347 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Pte3g01638 347 MobiDBLite consensus disorder prediction 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01638 Pte-Chr3 15547056 15548104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01638 28 348 C3H Transcription Factor Family AT1G04360 53.714 1.81e-110 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01638 - - tcc:18603200 429.869