Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01619 ATGAAGAGTCCGCATGCTGCAACTTCTGGGGCTTCATGTCATGTGAAGTTTATGGGGTCTAAAGAATATGTCAACATGTCTTCTCCTCCTCCTTCTTGTTCCAAGGAGTCGTTATTCTCAGCTGACACTGAGCTTGAGCTGGGGCTGGGTCTCAGCCTTGGTGGTGGGAAAAATAATGTGGGAAAAGCCAAGCCCTCTGCATTTGTTGGTAGAATCTTGACAGCGAAGGACTTCCCTACTACCATGGCATCTTCTGCTGTACATTCGACTGCTTCTCCTCTCTTCTCAGACAGAGTCAGTCCTTGTCTGGGTGCTGTTTCTGGGACTAAGAGAGCTGCTGACTCTGTTCCTCATGAGGGTGGATCTCCCACTGCTGCAAGCCAGGTTGTGGGATGGCCACCTATAAGGGCTCACAGAATGAATAGTTTGATAAACCAAGCAAAGTCACAAAGGGCTGAAGAAGACAAAGACAGTGGTGGAAGCACCAAGTGTACGAATCATGTTTCCATCACGAAGTCCAACAAGTCTCATTTCAAAGCAAAAACCCATCTGGGGTTTGTGAAGGTGAATATGGATGGAGTTCAGATAGGGAGAAAGGTTGATTTGAATGCTCATACAAGTTATGAGAACCTGGCCCACACAATAGAAGAAATGTTTCTCAGGCCTACCAGTACCAGGGCTGCTAATCAAATAGGTGGAGAGAAGGAAGCAGCAACTAGAGCCTCTAAGCTTTTAGATGGATCATCAGAGTTTGTTCTGACTTATGAAGATAAGGAAGGTGATTGGATGCTTGTTGGGGATGTCCCATGGAGGATGTTTGTCAGCTCAGTGAAAAGGCTTAGGATCATGAGGACATCAGAAGCCAGTGGACTTGGTAATAACATTCATGTCTTTGTTCTTTCAGTTAGATTTGGTTTTCTCTTACTATAA 930 0.4538 MKSPHAATSGASCHVKFMGSKEYVNMSSPPPSCSKESLFSADTELELGLGLSLGGGKNNVGKAKPSAFVGRILTAKDFPTTMASSAVHSTASPLFSDRVSPCLGAVSGTKRAADSVPHEGGSPTAASQVVGWPPIRAHRMNSLINQAKSQRAEEDKDSGGSTKCTNHVSITKSNKSHFKAKTHLGFVKVNMDGVQIGRKVDLNAHTSYENLAHTIEEMFLRPTSTRAANQIGGEKEAATRASKLLDGSSEFVLTYEDKEGDWMLVGDVPWRMFVSSVKRLRIMRTSEASGLGNNIHVFVLSVRFGFLLL* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01619 309 FunFam Auxin-responsive protein 179 295 - -
Pte3g01619 309 MobiDBLite consensus disorder prediction 146 167 - -
Pte3g01619 309 SUPERFAMILY CAD & PB1 domains 186 283 - -
Pte3g01619 309 ProSiteProfiles PB1 domain profile. 184 287 IPR000270 GO:0005515
Pte3g01619 309 Gene3D - 178 298 - -
Pte3g01619 309 Pfam AUX/IAA family 43 292 IPR033389 -
Pte3g01619 309 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 42 290 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01619 Pte-Chr3 15239377 15241729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01619 157 297 B3 DNA Binding Superfamily AT3G61830 28.369 1.48e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pte3g01619 AUX_IAA 9.9e-65 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01619 K14484 - qsa:O6P43_003143 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01619 3 15239377 15241729 Pte3g01619 3 15239377 15241729 RCT