Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01612 ATGTCTTCGGATATAATGGCTACCCATATGACTTCGGGTGTTATAGAAGATGGTTGGAGGAAAGGACCTTGGACTGCTGAGGAAGACAGACTGCTCATTGACTATGTCAAGCTGCATGGTGAAGGCAGATGGAATTCTGTAGCAAGGCTTGCAGGGCTGAGGAGGAATGGCAAGAGTTGCAGATTGAGATGGGTGAATTACTTGAGGCCAGACCTTAAGAGAGGCCAGATAACCCCACATGAAGAGAGCATAATCTTAGAGCTGCATGCTAAGTGGGGAAACAGGTGGTCAACAATTGCAAAAAGCTTGCCTGGAAGGACTGACAATGAAATCAAGAATTACTGGAGGACTCATTTCAAGAAAAACGTCAAAGCTCCATCTGGTGCTGCTTTAAGGACCAGAAATCGCTTCCTAAAGAGGCAACAATTTCTCCTGCAGCAGGAGCAACAGCAGCAACATTATCAACAGCAAATTCAATTCAACCCAATAGACTTGAAGGGGATTGTTTCTTTGCTTGATTACAATGATCACAGAACACCATTTTTGTCCCAAGCAATGTACTCCGACAGTAATTCTACTGAGGAGCAAGGGTACTTTTTGTCCATGCTCAATGGAAACATACCTTCACCAGCGGCCCAAAATGAGGACTGTCAGGACATTATATGGGATGGACTGTGGAATTGA 684 0.4459 MSSDIMATHMTSGVIEDGWRKGPWTAEEDRLLIDYVKLHGEGRWNSVARLAGLRRNGKSCRLRWVNYLRPDLKRGQITPHEESIILELHAKWGNRWSTIAKSLPGRTDNEIKNYWRTHFKKNVKAPSGAALRTRNRFLKRQQFLLQQEQQQQHYQQQIQFNPIDLKGIVSLLDYNDHRTPFLSQAMYSDSNSTEEQGYFLSMLNGNIPSPAAQNEDCQDIIWDGLWN* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01612 227 CDD SANT 78 119 IPR001005 -
Pte3g01612 227 FunFam Myb transcription factor 21 73 - -
Pte3g01612 227 Gene3D - 21 73 - -
Pte3g01612 227 Pfam Myb-like DNA-binding domain 74 118 IPR001005 -
Pte3g01612 227 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Pte3g01612 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 123 IPR017930 -
Pte3g01612 227 SMART sant 20 70 IPR001005 -
Pte3g01612 227 SMART sant 73 121 IPR001005 -
Pte3g01612 227 SUPERFAMILY Homeodomain-like 19 115 IPR009057 -
Pte3g01612 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 72 IPR017930 -
Pte3g01612 227 CDD SANT 23 68 IPR001005 -
Pte3g01612 227 Gene3D - 78 160 - -
Pte3g01612 227 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Pte3g01612 227 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Pte3g01612 227 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 18 183 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pte3g01612 227 FunFam MYB-related transcription factor 77 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01612 Pte-Chr3 15109399 15111214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01612 15 227 MYB Transcription Factor Family AT3G24310 62.821 3.50e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte3g01612 Myb_DNA-binding 7.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01612 K09422 - gmx:100795981 305.064