Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01588 ATGGTGTCGGGGTCAGGTATCTGCGCGAAGCGCGTGGTTGTTGACGCGCGCAATCACATGCTAGGTAGGCTTGCTTCCATCATAGCCAAAGAGCTTCTCAATGGCCAGAAAGTAGTGGTGGTTCGATGTGAGGAAATCTGTATTTCTGGTGGTCTGGTCCGTCAAAAGATGAAGTACATGAGGTTCTTACGTAAGCGGATGAACACCAAGCCTTCTCACGGCCCTATCCATTTCCGTGCTCCAGCAAAGATCTTATGGCGTACCATTCGTGGTATGATTCCTCACAAGACGAAGAGGGGAGCTGCTGCACTTGCTCGGTTGAAGGCATATGAGGGTGTCCCACCACCGTATGACAAGATGAAGAGGATGGTTATCCCTGATGCTCTTAAGGTTTTGAGGCTTCAAAAGGGGCACAAGTATTGCTTGTTGGGCAGACTCTCCTCAGAGGTCGGATGGAACCACTATGAAACCATCAAGGAGCTGGAGAAGAAGAGAAAGGAGAGAGCACAGGTTGCATATGAGAGAAAGAAGCAGTTGTCAAAACTGAGGTCCAAAGCTGAAAAGGTTGCCGAGGAGAAACTGGGTCCTCAATTGGAAATTATTGCTCCGATCAAATATTAA 621 0.4847 MVSGSGICAKRVVVDARNHMLGRLASIIAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKMKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNHYETIKELEKKRKERAQVAYERKKQLSKLRSKAEKVAEEKLGPQLEIIAPIKY* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01588 206 NCBIfam 50S ribosomal protein L13 12 153 IPR005755 GO:0003735|GO:0006412|GO:0015934
Pte3g01588 206 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Pte3g01588 206 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Pte3g01588 206 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pte3g01588 206 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pte3g01588 206 PANTHER RIBOSOMAL PROTEIN L13 1 187 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pte3g01588 206 Gene3D Ribosomal protein L13 8 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Pte3g01588 206 FunFam 60S ribosomal protein L13a-4 8 154 - -
Pte3g01588 206 Pfam Ribosomal protein L13 10 114 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pte3g01588 206 Gene3D - 156 206 - -
Pte3g01588 206 FunFam 60S ribosomal protein L13a 155 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01588 Pte-Chr3 14657095 14658646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01588 1 207 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 89.372 1.19e-138 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01588 K02872 - pvy:116108980 393.66