Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01555 ATGGACGGAGTTCATGTAACCGGCGGTGGAGGCAGCGGAGCTCCGGCACCATTCCTTCTGAAAACGTACGAGATGGTCGACGACTCTTCTAGCGACGTCATCGTCTCTTGGAGCTCCAGAAAGAACAGTTTTGTGGTTTGGAAACCGCCCGAGTTTTCAAGCCGTCTTCTACCTACCTACTTTAAGCACAATAACTTCTCCAGCTTCGTCAGACAGCTCAACACCTATGGATTTAGGAAAATAGACCCAGAACGATGGGAATTTGGCAATGAAGATTTTGTGAAAGATCAAAAGCACCTCCTTAAGAACATTCATCGCAGGAAACCTATTCATAGTCACAGTCAGCCTCCAGGTTCTCTTGTGGATGCTGAAAGGGCTGCACTTGATGAAGAAATAGATCGGATTTCTCGTGAAAAAGCTGGAATCGAGTCCAATTTATTAAAGTTAAAGCAGGAGAGATCTGCTGCAAAGCTTCAACTAGAAGACATAACCAAGAGAATTGATGGAATGGAGAAAAGGCAGGAGAATTTGCTTAACTTTTTTGACAAGGCTCTTCAGAATCCTACTTTTGTTGAACACCTTCTGTGGAAATTTGAATCAATGGATTTGTCAGCCTATAACAAAAAACGACGATTGCCTGAGGCTGGTCATTGGCATCTAGTTTCTGAGAACAATGCTACTGACAAAGGTGGCAAAAGCAGGGCTGAATTTGGAAATGTTTTCCACCAGGATTTCTCAAATAAACTCAGACTTGAATTATCATCAGCTATTTCTGATATTAACTTAATGTCACATAGCACGCAGAGCTCCGTTGAAGATGGGGCAAGTCCACCTAGAAACATATCTGGAGAACCAAAAGTAATGCAGACACGATCAGAGACACTTGTAGTTTCAGCTGAAACTTTAGAGCCTTCAGATGCTGGGACATCTTTTACATTTCAAATGGATTCTTCTTTATCACGAAGACCAATTAACGACAGCACAAGACAACATTCTTTTCAGCCAAGTTTAACCTCTAGCGATGAAGGTGATGGTCATTTATCCTGCCATTTGAATCTGACCTTGGCGTCCTCATCTTTGCGTGCACACAAAAATCCTTACTTAACAAAGACGTCCCAAATAAGTAATCCAAGTATTGGAAAATCCTCTGATACAATGTCCCGTGGGAATGAGAAACGATCCGATAATGGAGTTTCTTCTAGTCAAACCCCAATCAATGAGGTCGCTAACTTATCTTCTTCGAAAGAGGTACAAAATAACACTCAAGCCGACGCCCCAGCTAGAGTGAATGACGTGTTCTGGGAACAGTTCCTTACGGAGAGGCCTGGATGTTCAGATACTGAAGAAGCAATTTCAAACTATAGGTCAAATGCATGTGACGAACAAGAGGATAGAAGATCAGGTCATATCGTTTCTAGAGCTGTAAATAATGTGAAACAGCTGACACTCTGA 1452 0.4229 MDGVHVTGGGGSGAPAPFLLKTYEMVDDSSSDVIVSWSSRKNSFVVWKPPEFSSRLLPTYFKHNNFSSFVRQLNTYGFRKIDPERWEFGNEDFVKDQKHLLKNIHRRKPIHSHSQPPGSLVDAERAALDEEIDRISREKAGIESNLLKLKQERSAAKLQLEDITKRIDGMEKRQENLLNFFDKALQNPTFVEHLLWKFESMDLSAYNKKRRLPEAGHWHLVSENNATDKGGKSRAEFGNVFHQDFSNKLRLELSSAISDINLMSHSTQSSVEDGASPPRNISGEPKVMQTRSETLVVSAETLEPSDAGTSFTFQMDSSLSRRPINDSTRQHSFQPSLTSSDEGDGHLSCHLNLTLASSSLRAHKNPYLTKTSQISNPSIGKSSDTMSRGNEKRSDNGVSSSQTPINEVANLSSSKEVQNNTQADAPARVNDVFWEQFLTERPGCSDTEEAISNYRSNACDEQEDRRSGHIVSRAVNNVKQLTL* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01555 483 ProSitePatterns HSF-type DNA-binding domain signature. 57 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte3g01555 483 MobiDBLite consensus disorder prediction 319 345 - -
Pte3g01555 483 Pfam HSF-type DNA-binding 18 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte3g01555 483 Gene3D - 12 108 IPR036388 -
Pte3g01555 483 MobiDBLite consensus disorder prediction 265 291 - -
Pte3g01555 483 PRINTS Heat shock factor (HSF) domain signature 18 41 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte3g01555 483 PRINTS Heat shock factor (HSF) domain signature 56 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte3g01555 483 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte3g01555 483 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 286 IPR027725 -
Pte3g01555 483 Coils Coil 125 173 - -
Pte3g01555 483 MobiDBLite consensus disorder prediction 367 385 - -
Pte3g01555 483 SMART hsfneu3 14 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte3g01555 483 MobiDBLite consensus disorder prediction 367 404 - -
Pte3g01555 483 SUPERFAMILY "Winged helix" DNA-binding domain 15 107 IPR036390 -
Pte3g01555 483 FunFam Heat shock transcription factor 1 11 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01555 Pte-Chr3 14047616 14050838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01555 18 484 HSF AT4G13980 54.545 2.13e-165 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pte3g01555 HSF_DNA-bind 2.4e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01555 K09419 - qsa:O6P43_023582 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01555 3 14047616 14050838 Pte3g01555 3 14047616 14050838 RCT