Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01553 ATGTATTCCAGCGCAAGCCAATTCGACGGCAACGCAGCCTTCTCCGGTGGAGGATTTATGCCTTCTCAGTCTACTCAAGCTCCTGAAAATGTCTTCGGCATCTCTAAAAATCGTGATTCTCAGTCCTTGCTTCCACTGACTGTCAAACAGATTAATGATGCATTTCAATCCAGTGATGATAAATCCAACTTGATAGTTGATGGTGTGGATGTAAACAATGTCACTCTTGTTGGAAAAGTATGCAATAGAGCTGGAAGGATTACAGATATCACTTTCGCGCTTGATGATGGTACCGGAAAATTAGAGTGTACTAAATGGTTCCAGGAAGCTGTAGACACAAGTGAAGTGGAGGGTATAATGGATGGAATGTATGTACGGGTCCATGGACATCTGAAAGGCTTTCAGGGTAAAAGGACCTTAAATATTTTCTCAATCAGGCCTGTGGCTGACTTTAATGAGATAGCAAGCCACTTCATTGATTGCATATATGTCCATCTCTATAATACCAAGTTGCGGACTGGTCTCCCTGCTCAGCAACATATAATAAATTCGATAAGTACACCATCGAAGGGCTTCCAAGATGCAATACAAAATCGAGTAAGAAAGTTTCTGATTATAACCTTTGTCAAGTTCTTTTTGCCCACATCCTTTCTGCTTCTCCAAACCCTTCCATTTCAGTTTCATGGTCAAAGTAACACTGGTGGGCAGAAGAGCGCTGAAGATATGGTGTTAGAAGTATTACATCTTCCGTCATTTAGGGACAAGGATGAGGGAGTGCACCTTGATACTATTGGTCAGCATCTCAGGATTCCTAAGGATAAGCTCATGTTGGCTATAAAGAATCTTATCGAGGATGGCAATATATATGAAGCTATATCGGATCATTATAAGTCCATTGTCAATGGTTGA 909 0.4114 MYSSASQFDGNAAFSGGGFMPSQSTQAPENVFGISKNRDSQSLLPLTVKQINDAFQSSDDKSNLIVDGVDVNNVTLVGKVCNRAGRITDITFALDDGTGKLECTKWFQEAVDTSEVEGIMDGMYVRVHGHLKGFQGKRTLNIFSIRPVADFNEIASHFIDCIYVHLYNTKLRTGLPAQQHIINSISTPSKGFQDAIQNRVRKFLIITFVKFFLPTSFLLLQTLPFQFHGQSNTGGQKSAEDMVLEVLHLPSFRDKDEGVHLDTIGQHLRIPKDKLMLAIKNLIEDGNIYEAISDHYKSIVNG* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01553 302 Gene3D - 229 300 IPR036388 -
Pte3g01553 302 FunFam replication protein A 32 kDa subunit A-like 36 170 - -
Pte3g01553 302 SUPERFAMILY Nucleic acid-binding proteins 43 170 IPR012340 -
Pte3g01553 302 Pfam Replication protein A C terminal 230 294 IPR014892 -
Pte3g01553 302 Gene3D - 35 170 IPR012340 -
Pte3g01553 302 PIRSF RPA32 1 300 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pte3g01553 302 SUPERFAMILY "Winged helix" DNA-binding domain 235 299 IPR036390 -
Pte3g01553 302 CDD RPA2_DBD_D 73 166 - -
Pte3g01553 302 Pfam OB-fold nucleic acid binding domain 74 147 IPR004365 GO:0003676
Pte3g01553 302 PANTHER REPLICATION PROTEIN A-RELATED 7 299 IPR040260 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01553 Pte-Chr3 14016963 14021834 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01553 4 299 Core DNA Replication Machinery Family AT2G24490 39.799 7.94e-76 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01553 K10739 - qsa:O6P43_022320 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01553 3 14016963 14021834 Pte3g01553 3 14016963 14021834 RCT