Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01542 ATGGATCAAGAATTCATTTTCCGTTCAAAACTCCCTGACATTTACATCCCCAGTCACCTACCTCTCCATACCTACTGCTTTGAGAATATCTCCAAATTCAAGGACCGTCCTTGCTTAATCAATGGCAACACCGGTGAGACCTTCACCTATACCGACGTTGAACTCATTGCCAGAAAAGTCGCCTCGGGTCTCAACAACCTCGGCATCGAACAGGGCGATGTCATCATGATCTTGCTTCCGAACTGCCCTCAATTTGTCTTCGCTTTTCTTGGTGCCTCCTATCGTGGTGCCATCATCACTACTTCAAATCCTTTCTACACACCAGCTGAGTTTGCAAAACAAGCCAAGGCATCCAACACCAAACTCATCGTAACACAGTCAAACTACGTAGACAAAGTCAAGGATTTTGCCAAAGACAACGATGTCAAGGTCATCTGCGTGGACAGCACTCCTCCTGGTTCAGATTCAGAGGGGTTCTTGCATTTCTCGGAGTTAAGTCAAGCCGATGAGAAGGATATCCCTGCTGTAAAAATCAATCCAGACGACGTCGTTGCTCTTCCATATTCATCTGGCACAACAGGCCTCCCTAAGGGTGTCATGTTAACTCACAAAGGTCTCGTCACGAGTGTGGCGCAACAGGTTGATGGAGACAACCCCAATCTGTATTTTCACAGTGAGGATGTGATTTTGTGTGTATTGCCTCTGTTTCACATTTACTCATTGAATTCAGTGTTGCTCTGTGGGCTGAGAGTTGGGGCAACCATTCTGATCATGCAAAAGTTTGAGATATCGACACTGTTAGAACTGGTTGAGAAGCACAAGGTGACAATTGCACCGTTTGTGCCGCCAATCGTGTTGGCGATTGCAAAGAGCCCAGAGATTCACCGGTACGACTTGTCGTCGATTAGGATAGTGCTTTCAGGTGCGGCACCCATGGGTAAAGAACTGGAGGAAACTCTCAGAACAAAGCTTCCAAATGCAATACTGGGACAGGGTTATGGTATGACAGAGGCTGGGCCAGTGTTGTCCATGTGTCTCGCTTTTGCAAAGGAACCCTTTGAGATAAAATCTGGTGCGTGCGGGACCGTAGTAAGGAATGCAGAGATGAAGATAGTTGACCCTGAAACTGGTTCTTCACTCCCAAGAAACCAAGCCGGGGAGATTTGCATTCGAGGCAACCAAATCATGAAAGGTTATCTGAATGACCCTGAAGCTACGAAGAGGACCATAGACATAGATGGATGGCTTCACACTGGTGACATAGGTTTCATTGATGATGAGGATGAGCTGTTCATCGTTGACAGGTTAAAGGAATTGATTAAGTACAAAGGGTTCCAAGTAGCCCCAGCAGAGCTAGAAGCAATGCTAATTGCCCACCCTAACATAGCTGATGCTGCCGTTGTACCCATGAAAGATGAAGCAGCAGGAGAGGTTCCTGTTGCGTTTGTTGTCAAATCAAACGGCTCAAAGATAACGGAAGATGAAATTAAACAGTACATCTCAAAACAGGTGGTGTTTTATAAGAGAATCAGTAGAGTGTTCTTCGTAAACGCCATTCCTAAAGCTCCTTCAGGAAAAATCTTGAGGAAAGAGCTAAGAGAAAGATTGAGTGGCGGTCAAAGTAATTAA 1629 0.4567 MDQEFIFRSKLPDIYIPSHLPLHTYCFENISKFKDRPCLINGNTGETFTYTDVELIARKVASGLNNLGIEQGDVIMILLPNCPQFVFAFLGASYRGAIITTSNPFYTPAEFAKQAKASNTKLIVTQSNYVDKVKDFAKDNDVKVICVDSTPPGSDSEGFLHFSELSQADEKDIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGDNPNLYFHSEDVILCVLPLFHIYSLNSVLLCGLRVGATILIMQKFEISTLLELVEKHKVTIAPFVPPIVLAIAKSPEIHRYDLSSIRIVLSGAAPMGKELEETLRTKLPNAILGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPETGSSLPRNQAGEICIRGNQIMKGYLNDPEATKRTIDIDGWLHTGDIGFIDDEDELFIVDRLKELIKYKGFQVAPAELEAMLIAHPNIADAAVVPMKDEAAGEVPVAFVVKSNGSKITEDEIKQYISKQVVFYKRISRVFFVNAIPKAPSGKILRKELRERLSGGQSN* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01542 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 8 437 - -
Pte3g01542 542 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Pte3g01542 542 FunFam 4-coumarate--CoA ligase 2 438 538 - -
Pte3g01542 542 Gene3D - 437 538 IPR045851 -
Pte3g01542 542 Pfam AMP-binding enzyme 28 442 IPR000873 -
Pte3g01542 542 SUPERFAMILY Acetyl-CoA synthetase-like 9 538 - -
Pte3g01542 542 Gene3D - 1 436 IPR042099 -
Pte3g01542 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 3 534 - -
Pte3g01542 542 CDD 4CL 16 532 - -
Pte3g01542 542 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01542 Pte-Chr3 13892775 13896766 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01542 2 504 Monolignol Biosynthesis Gene Families AT1G51680 71.146 0.0 742
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01542 K01904 - qsa:O6P43_022302 937.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01542 3 13892775 13896766 Pte3g01542 3 13892775 13896766 RCT