LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte3g01541	ATGAATTTCAAACAAAGTACTTCTCATCGTAACCTCAGTCTTGCTGACAAACAACTTAACTTGGATCTTGTTCTTGAGCCATCCTCTTCCTCTTCATCCTTATCACCTCTTACACCCACAGATCATCCAAGGATTTTCTCGTGCAACTACTGTCAAAGAAAGTTTTACAGCTCACAAGCATTAGGAGGTCATCAAAATGCTCACAAGCTGGAGCGGTCATTGGCTAAGAAAAGTAGAGAGCTATGTTCGGCCATACAAGCTTATGGGGGTTCATCTCAAGACTTGGTGACGAACATTGCTGGTACAAGAAATTTGGCGGGTGTTCGATCACTTTCACCGCCTGGGCATGAATACCAAAGAGGATTTAATGGTGGCGGGATTTGTTATGGAAGGAGAGAGATGAGCAGTGTTGTTACCAAAGAGGTTGTTGCTTCTTGGTCTAGGGGATATATTGCATCTGAAGATCTTGAAAAGGATGCAACCCATCTTGACTTGTCGTTGAGGCTTTGA	510	0.4333	MNFKQSTSHRNLSLADKQLNLDLVLEPSSSSSSLSPLTPTDHPRIFSCNYCQRKFYSSQALGGHQNAHKLERSLAKKSRELCSAIQAYGGSSQDLVTNIAGTRNLAGVRSLSPPGHEYQRGFNGGGICYGRREMSSVVTKEVVASWSRGYIASEDLEKDATHLDLSLRL*	170

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte3g01541	169	ProSiteProfiles	Zinc finger C2H2 type domain profile.	46	73	IPR013087	-
	Pte3g01541	169	SUPERFAMILY	beta-beta-alpha zinc fingers	43	73	IPR036236	-
	Pte3g01541	169	PANTHER	C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN	11	92	IPR044246	GO:0009788
	Pte3g01541	169	ProSitePatterns	Zinc finger C2H2 type domain signature.	48	68	IPR013087	-
	Pte3g01541	169	Gene3D	Classic Zinc Finger	28	97	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte3g01541	Pte-Chr3	13861072	13861751	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte3g01541	1	170	C2H2 Transcription Factor Family	AT5G57520	45.763	1.21e-28	102

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Pte3g01541		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte3g01541	-		-	qsa:O6P43_022301	153.295

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pte3g01541	3	13861072	13861751	Pte3g01541	3	13861072	13861751	RCT