Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01540 ATGCCGTCCTCTTTGTCTTCATGCCTATCACCTATAACTCCCATAGATCATCCAAGGATTTTCTCGTGCAACTACTGCCAAAGAAAGTTTTACAGCTCACAAGCGTCAGGAGGTCATCAAAATGCTCACAAGCTGGAGCGGTCACTGGCTAAGAAAAGTAGAGCTATGTTCGGCCATGCAAGCTCATGGGGGTTCAACTCAAGACTTGGTGAGGAACGTTGCTGGTACAAGAAATTTGGCGGGGTGTTCAATCACTTTCACCGCCTGGACATGAATATCAAGGAGGATTTAATGGTGGCAGGATTTGTTATGGAAGGAGAGAGATGA 327 0.4618 MPSSLSSCLSPITPIDHPRIFSCNYCQRKFYSSQASGGHQNAHKLERSLAKKSRAMFGHASSWGFNSRLGEERCWYKKFGGVFNHFHRLDMNIKEDLMVAGFVMEGER* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01540 108 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 16 79 IPR044246 GO:0009788
Pte3g01540 108 ProSitePatterns Zinc finger C2H2 type domain signature. 23 43 IPR013087 -
Pte3g01540 108 ProSiteProfiles Zinc finger C2H2 type domain profile. 21 48 IPR013087 -
Pte3g01540 108 SUPERFAMILY beta-beta-alpha zinc fingers 18 48 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01540 Pte-Chr3 13859895 13860420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01540 15 57 C2H2 Transcription Factor Family AT5G57520 81.395 1.54e-21 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01540 - - vra:106768043 92.4337