Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01539 ATGTCTAACACCAACGTGAAGCATTCGAGTACGGCGACTGATCCCTTTTTTGTTATGCCAGATATCAGTGAATATTATTGCAGACTGGACGACGGTGATGTCGTCACTCATTTCCCGCCTGGATATAGGTTTTTACCCAGTGACGAAGAAATAGTGATGGAATACTTGAAGAGAAAAAATGAGAATAAGAGATTACCACCTAACCCCATTAAGGAGATGGAAATCTTCAGATATGCTCCCGAAGAACTCGCAGAAAGTTATGATCAGATGAACAATGGAAACGACTGCTATTTCTTCACATCACTGCGCAGGTATAGAGATGATGGAACAATTCAAGTTTCTGGCGACGGGTATTGGAAAGCAACAGGAAGTGATGAAGCTATAACACATGAGGGTCTGAAAGTGGGATCCGAGAAAGTGTTTGAGTACTTTAAAGGAAACCCTTCTACAGGTGTTAAGACAAATTGGATGATTCATGAGTTTAGAGTTGATGACGGTGTTCTGGAGGATAGGAAGATGAGTGGTTGGGCTTTGTGCAGAATGTATGAGAAGACGAAACGTGATCTTTTAATAAAAGAAACTTCAATAGATGATGAGGAGATTGAAGTTTGA 612 0.4069 MSNTNVKHSSTATDPFFVMPDISEYYCRLDDGDVVTHFPPGYRFLPSDEEIVMEYLKRKNENKRLPPNPIKEMEIFRYAPEELAESYDQMNNGNDCYFFTSLRRYRDDGTIQVSGDGYWKATGSDEAITHEGLKVGSEKVFEYFKGNPSTGVKTNWMIHEFRVDDGVLEDRKMSGWALCRMYEKTKRDLLIKETSIDDEEIEV* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01539 203 Pfam No apical meristem (NAM) protein 39 163 IPR003441 GO:0003677|GO:0006355
Pte3g01539 203 Gene3D NAC domain 47 189 IPR036093 GO:0003677|GO:0006355
Pte3g01539 203 ProSiteProfiles NAC domain profile. 38 184 IPR003441 GO:0003677|GO:0006355
Pte3g01539 203 SUPERFAMILY NAC domain 35 184 IPR036093 GO:0003677|GO:0006355
Pte3g01539 203 PANTHER NAC TRANSCRIPTION FACTOR 56 38 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01539 Pte-Chr3 13858123 13859425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01539 38 193 NAC Transcription Factor Family AT1G69490 35.976 1.36e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte3g01539 NAM 2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01539 - - qsa:O6P43_002877 149.828