Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01533 ATGGGAATTCACAGTCATAACAGTCATAGAGGAAGCTTTTTTTTCAAAGGCTTAAGTGGTGGATGGGGCATAGCTGCCAAGTCCTGTGACTCTTGTAAATCAACTTCTGCTGCCGTTTTCTGCCGAGCTGACTCAGCTTTCTTATGTATCACATGCGACACCAAAATCCACTCCGCCAATAAGCTCACTTCCCGCCATGAGCGTGTTTGGATGTGCCAGGTCTGTGAACAGGCACCAGCATCTGTCACTTGCCGTGCTGACGCAGCCGCTCTTTGCGTCACGTGCGACTCTGATATTCACTCCGCTAACCCATTAGCCCGTCGCCACGAACGGTTTCCGGTTGAGCCGTTCTTCGACTCGGCCGAGTCAGCTATCAAGTCCTCACCTGTGACCAACTTTTTAGTTCCCAATATGATTGTTACCGATGTCAGCGTTCACCGAGATGAGCTAGAAAACGGGTTCTGGGACATTCCAAATTCAAACTTCGGGGTGAAACTTCTGGATGGCCCGGATATGAAGTCTTCGGCAGATGATTTGTTGTTTTCTGAAGTGGATGATCCCTTTTTGGACTTTGAATATCCCATCAATTCCATTGAAACCAAGCTTCAGCAAATTCCATACGGTGCTGCTGCCACCGATAGTGTTGTTCCGGTTCAAACCAAGACCAGCACAACTCCTATGATCAACCAAAGTTGTGAGCCTTACTTCAATATTGACTTTTGCAGATCGAAGCTGAGTTCTTTCAGCTACCCAACTCAATCTATCAGTCAAAGTGTTTCATCTTCTGAAGTTGGGGTTGTTCCGGATGGAAATTCCTTCTCAGAAATCTCATTTGAAATGGGTGGAAACCTAAGCAACGGAGCTGATCCGAATGGAACCGGTTCGGTGATAGCGAAAGCGACCCAATTGCGTGGATTGGACAGGGAAGCGAGAGTATTAAGGTACAGAGAGAAGAGGAAGAATCGTAAGTTTGAGAAAATCATACGGTATGCTTCGAGGAAAGCGTACGCAGAAGCCAGGCCAAGAGTGAAAGGCCGGTTCGCTAAACGGAATGAAACAGATTCGGAAGTGGACAGGTTCTTCGGTGCAGCAGCGGTTTCTGCATCTGCTGCTACTGCGGGGCTGACGATGGACTGTCAGTACGGCGTCGTGCCCACGTTTTAA 1164 0.482 MGIHSHNSHRGSFFFKGLSGGWGIAAKSCDSCKSTSAAVFCRADSAFLCITCDTKIHSANKLTSRHERVWMCQVCEQAPASVTCRADAAALCVTCDSDIHSANPLARRHERFPVEPFFDSAESAIKSSPVTNFLVPNMIVTDVSVHRDELENGFWDIPNSNFGVKLLDGPDMKSSADDLLFSEVDDPFLDFEYPINSIETKLQQIPYGAAATDSVVPVQTKTSTTPMINQSCEPYFNIDFCRSKLSSFSYPTQSISQSVSSSEVGVVPDGNSFSEISFEMGGNLSNGADPNGTGSVIAKATQLRGLDREARVLRYREKRKNRKFEKIIRYASRKAYAEARPRVKGRFAKRNETDSEVDRFFGAAAVSASAATAGLTMDCQYGVVPTF* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01533 387 CDD Bbox1_BBX-like 29 71 - -
Pte3g01533 387 ProSiteProfiles Zinc finger B-box type profile. 67 114 IPR000315 GO:0008270
Pte3g01533 387 Pfam B-box zinc finger 69 113 IPR000315 GO:0008270
Pte3g01533 387 Pfam B-box zinc finger 27 69 IPR000315 GO:0008270
Pte3g01533 387 Pfam CCT motif 308 350 IPR010402 GO:0005515
Pte3g01533 387 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 29 371 IPR045281 GO:0009909
Pte3g01533 387 SMART bboxneu5 24 71 IPR000315 GO:0008270
Pte3g01533 387 SMART bboxneu5 72 114 IPR000315 GO:0008270
Pte3g01533 387 ProSiteProfiles Zinc finger B-box type profile. 24 71 IPR000315 GO:0008270
Pte3g01533 387 ProSiteProfiles CCT domain profile. 308 350 IPR010402 GO:0005515
Pte3g01533 387 CDD Bbox1_BBX-like 72 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01533 Pte-Chr3 13791069 13792329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01533 15 388 C2C2-CO-like Transcription Factor Family AT5G57660 54.974 4.27e-119 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pte3g01533 zf-B_box 4.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01533 - - qsa:O6P43_002897 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01533 3 13791069 13792329 Pte3g01533 3 13791069 13792329 RCT